Gene
RNA
| Item | Value |
|---|---|
| gene id | G158946 |
| gene name | nox5 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 54294176 ~ 54294411 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| nox5 | Predicted to enable calcium ion binding activity and oxidoreductase activity. Acts upstream of or within neutrophil migration. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in eye; forebrain; hindbrain; midbrain; and spinal cord. Orthologous to human NOX5 (NADPH oxidase 5). |
| description |
|---|
| unnamed protein product |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU181469 | True | 236 | lncRNA | 0.48 | 1 | 54294176 | 54294411 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| dgkzb | LOC106560764 | coding | upstream | 102589 | 54100767 ~ 54191587 (+) |
| kcnj11l | irk11 | coding | upstream | 325013 | 53941853 ~ 53969163 (+) |
| bbs4 | LOC106560769 | coding | upstream | 367353 | 53905934 ~ 53926823 (+) |
| LOC110491599 | NA | coding | upstream | 395985 | 53894134 ~ 53898191 (+) |
| snx22 | LOC106560771 | coding | upstream | 403438 | 53867516 ~ 53890738 (+) |
| itga11b | itga11 | coding | downstream | 70507 | 54364918 ~ 54455954 (+) |
| cln6b | cln6 | coding | downstream | 179612 | 54474023 ~ 54486909 (+) |
| calml4b | calml4 | coding | downstream | 197314 | 54491725 ~ 54504596 (+) |
| spg11 | spg11 | coding | downstream | 558401 | 54852812 ~ 54944780 (+) |
| LOC110491832 | LOC106560753 | coding | downstream | 657490 | 54951901 ~ 54976149 (+) |
| G158945 | NA | non-coding | upstream | 169 | 54293717 ~ 54294007 (+) |
| G158944 | NA | non-coding | upstream | 718 | 54293200 ~ 54293458 (+) |
| G158942 | NA | non-coding | upstream | 1935 | 54291974 ~ 54292241 (+) |
| G158939 | NA | non-coding | upstream | 3825 | 54290098 ~ 54290351 (+) |
| G158887 | NA | non-coding | upstream | 77679 | 54213612 ~ 54216497 (+) |
| G159405 | NA | non-coding | downstream | 49259 | 54343670 ~ 54343948 (+) |
| G159407 | NA | non-coding | downstream | 49598 | 54344009 ~ 54344375 (+) |
| G159412 | NA | non-coding | downstream | 52441 | 54346852 ~ 54351722 (+) |
| G159417 | NA | non-coding | downstream | 59645 | 54354056 ~ 54354331 (+) |
| G159466 | NA | non-coding | downstream | 194368 | 54488779 ~ 54489407 (+) |
| G158778 | LOC106560766 | other | upstream | 272272 | 54021608 ~ 54021904 (+) |
| G156000 | LOC106560791 | other | upstream | 2469994 | 51816510 ~ 51824182 (+) |
| G155541 | NA | other | upstream | 2873054 | 51420847 ~ 51421122 (+) |
| rl28 | rl28 | other | upstream | 2877058 | 51412121 ~ 51417154 (+) |
| LOC110501653 | LOC106560673 | other | upstream | 2971743 | 51317121 ~ 51339537 (+) |
| G159415 | NA | other | downstream | 58572 | 54352983 ~ 54353388 (+) |
| G159889 | LOC106562215 | other | downstream | 433885 | 54728296 ~ 54728860 (+) |
| G160569 | NA | other | downstream | 1651732 | 55946143 ~ 55947245 (+) |
| G161687 | NA | other | downstream | 1950633 | 56245044 ~ 56252598 (+) |
| G162130 | NA | other | downstream | 2753903 | 57048314 ~ 57053642 (+) |
