G159407


Basic Information

Item Value
gene id G159407
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 54344009 ~ 54344375 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU181961
ttttccaaatcatatccaatcaattgaatttaccacaggtggactccaatcaagtttagaaacatctcaagaaggatcaatggaaacaggatgcacctgagctcaatttcgagtctcatagcgaagggtctgaatacttatgcaaataaggtatttatttttctgtattttttatacatttgcaaacatttataaaaacctgttttccctttgtcattatggggttgtaAGGGAGTGCGTAACTggcggcagggaagtcaggcgcaggagagcaaaactgGGTAATCAACGGAGCAGTTTTATTCATAAAACCACCGGAAACCAGAACAACAAacaaatgggtacaaaacccgtcgcccTCCAGAGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU181961 True 367 lncRNA 0.40 1 54344009 54344375

Neighbor

gene id symbol gene type direction distance location
dgkzb LOC106560764 coding upstream 152422 54100767 ~ 54191587 (+)
kcnj11l irk11 coding upstream 374846 53941853 ~ 53969163 (+)
bbs4 LOC106560769 coding upstream 417186 53905934 ~ 53926823 (+)
LOC110491599 NA coding upstream 445818 53894134 ~ 53898191 (+)
snx22 LOC106560771 coding upstream 453271 53867516 ~ 53890738 (+)
itga11b itga11 coding downstream 20543 54364918 ~ 54455954 (+)
cln6b cln6 coding downstream 129648 54474023 ~ 54486909 (+)
calml4b calml4 coding downstream 147350 54491725 ~ 54504596 (+)
spg11 spg11 coding downstream 508437 54852812 ~ 54944780 (+)
LOC110491832 LOC106560753 coding downstream 607526 54951901 ~ 54976149 (+)
G159405 NA non-coding upstream 61 54343670 ~ 54343948 (+)
G158946 nox5 non-coding upstream 49598 54294176 ~ 54294411 (+)
G158945 NA non-coding upstream 50002 54293717 ~ 54294007 (+)
G158944 NA non-coding upstream 50551 54293200 ~ 54293458 (+)
G158942 NA non-coding upstream 51768 54291974 ~ 54292241 (+)
G159412 NA non-coding downstream 2477 54346852 ~ 54351722 (+)
G159417 NA non-coding downstream 9681 54354056 ~ 54354331 (+)
G159466 NA non-coding downstream 144404 54488779 ~ 54489407 (+)
G159507 NA non-coding downstream 186410 54530785 ~ 54530990 (+)
G159697 NA non-coding downstream 249885 54594260 ~ 54594503 (+)
G158778 LOC106560766 other upstream 322105 54021608 ~ 54021904 (+)
G156000 LOC106560791 other upstream 2519827 51816510 ~ 51824182 (+)
G155541 NA other upstream 2922887 51420847 ~ 51421122 (+)
rl28 rl28 other upstream 2926891 51412121 ~ 51417154 (+)
LOC110501653 LOC106560673 other upstream 3021576 51317121 ~ 51339537 (+)
G159415 NA other downstream 8608 54352983 ~ 54353388 (+)
G159889 LOC106562215 other downstream 383921 54728296 ~ 54728860 (+)
G160569 NA other downstream 1601768 55946143 ~ 55947245 (+)
G161687 NA other downstream 1900669 56245044 ~ 56252598 (+)
G162130 NA other downstream 2703939 57048314 ~ 57053642 (+)

Expression


Co-expression Network