G159408



Basic Information


Item Value
gene id G159408
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 54344613 ~ 54344852 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU181962
ACTGTGTCctgtgcatatgacaaataaacgTTAATTTTGATAGCATAATATGGATGGAATTTGTATTGTGTTGCTTTAACCAGTGTAACACGCTAAGGTAACCATCCAATTAATTGATGGTCCATACTCAACCAATacattctgaaaatattcagaccccttcactttctccacattttgttacgttacagccttattctaaaatggattttaaaaaatgaattctcatcaatctacacc

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU181962 True 240 lncRNA 0.44 1 54344613 54344852

Neighbor


gene id symbol gene type direction distance location
coro2bb coro2b coding downstream 4778 54303365 ~ 54339835 (-)
nox5 nox5 coding downstream 45667 54281716 ~ 54298946 (-)
ambra1b LOC106560763 coding downstream 76219 54213602 ~ 54268394 (-)
chrm4b LOC106560739 coding downstream 133657 54209058 ~ 54210956 (-)
phf21ab LOC106560766 coding downstream 286457 53996094 ~ 54058156 (-)
fem1b fem1b coding upstream 113813 54458665 ~ 54462837 (-)
LOC110491804 LOC106560756 coding upstream 176290 54510925 ~ 54525000 (-)
ciao2a fam96a coding upstream 502740 54847592 ~ 54852144 (-)
si:ch211-284k5.2 LOC106560792 coding upstream 634065 54978917 ~ 55001034 (-)
LOC110491875 NA coding upstream 1331197 55676049 ~ 55698528 (-)
G159353 NA non-coding downstream 42843 54301555 ~ 54301770 (-)
G159344 NA non-coding downstream 50493 54293908 ~ 54294120 (-)
G159343 NA non-coding downstream 52366 54291905 ~ 54292247 (-)
G159342 NA non-coding downstream 52777 54291591 ~ 54291836 (-)
G159418 NA non-coding upstream 9423 54354275 ~ 54354496 (-)
G159425 NA non-coding upstream 13620 54358472 ~ 54358708 (-)
G159589 NA non-coding upstream 124465 54469317 ~ 54469653 (-)
G159591 NA non-coding upstream 125518 54470370 ~ 54470688 (-)
G159592 NA non-coding upstream 126109 54470961 ~ 54471212 (-)
cd59 cd59-2 other downstream 373274 53969443 ~ 53971367 (-)
G159120 NA other downstream 487061 53856686 ~ 53857552 (-)
snx33 snx33 other downstream 1232322 53032902 ~ 53112547 (-)
G155610 NA other downstream 2927503 51412269 ~ 51417110 (-)
G159890 LOC106562215 other upstream 383447 54728299 ~ 54728860 (-)
LOC110491905 ppip5k1 other upstream 1590819 55935649 ~ 56006747 (-)
G161823 NA other upstream 1956503 56301355 ~ 56302095 (-)
G162657 NA other upstream 2482444 56827296 ~ 56830576 (-)
G162745 NA other upstream 2769715 57114567 ~ 57117150 (-)

Expression



Co-expression Network