G159417


Basic Information

Item Value
gene id G159417
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 54354056 ~ 54354331 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU181972
gtatGATAACGCTCTCgctaaacaggttaacattcacaaagccgcgggccAGTTGGATTACCtagacatgtactcaaagcatgcgcagaccaactggcaagtgtcttcactgacattttcaacctctctgagTCTGTGATACcgacatgtttcaaacagaccaacatactccctgtgcccaaggaagcgaaggtaacctgcctaaatgattaccgacccgtagcactcacgtcggtagccatgaagtgctttgaaaggctggtcatggcttacatg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU181972 True 276 lncRNA 0.35 1 54354056 54354331

Neighbor

gene id symbol gene type direction distance location
dgkzb LOC106560764 coding upstream 162469 54100767 ~ 54191587 (+)
kcnj11l irk11 coding upstream 384893 53941853 ~ 53969163 (+)
bbs4 LOC106560769 coding upstream 427233 53905934 ~ 53926823 (+)
LOC110491599 NA coding upstream 455865 53894134 ~ 53898191 (+)
snx22 LOC106560771 coding upstream 463318 53867516 ~ 53890738 (+)
itga11b itga11 coding downstream 10587 54364918 ~ 54455954 (+)
cln6b cln6 coding downstream 119692 54474023 ~ 54486909 (+)
calml4b calml4 coding downstream 137394 54491725 ~ 54504596 (+)
spg11 spg11 coding downstream 498481 54852812 ~ 54944780 (+)
LOC110491832 LOC106560753 coding downstream 597570 54951901 ~ 54976149 (+)
G159412 NA non-coding upstream 2334 54346852 ~ 54351722 (+)
G159407 NA non-coding upstream 9681 54344009 ~ 54344375 (+)
G159405 NA non-coding upstream 10108 54343670 ~ 54343948 (+)
G158946 nox5 non-coding upstream 59645 54294176 ~ 54294411 (+)
G158945 NA non-coding upstream 60049 54293717 ~ 54294007 (+)
G159466 NA non-coding downstream 134448 54488779 ~ 54489407 (+)
G159507 NA non-coding downstream 176454 54530785 ~ 54530990 (+)
G159697 NA non-coding downstream 239929 54594260 ~ 54594503 (+)
G159896 NA non-coding downstream 381469 54735800 ~ 54736001 (+)
G159923 NA non-coding downstream 397836 54752167 ~ 54752497 (+)
G159415 NA other upstream 668 54352983 ~ 54353388 (+)
G158778 LOC106560766 other upstream 332152 54021608 ~ 54021904 (+)
G156000 LOC106560791 other upstream 2529874 51816510 ~ 51824182 (+)
G155541 NA other upstream 2932934 51420847 ~ 51421122 (+)
rl28 rl28 other upstream 2936938 51412121 ~ 51417154 (+)
G159889 LOC106562215 other downstream 373965 54728296 ~ 54728860 (+)
G160569 NA other downstream 1591812 55946143 ~ 55947245 (+)
G161687 NA other downstream 1890713 56245044 ~ 56252598 (+)
G162130 NA other downstream 2693983 57048314 ~ 57053642 (+)
G163513 LOC106561046 other downstream 3573819 57928150 ~ 57931991 (+)

Expression


Co-expression Network