Gene
RNA
| Item | Value |
|---|---|
| gene id | G160127 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 55073529 ~ 55074103 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| Transposable element Tcb2 transposase |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU182721 | True | 439 | lncRNA | 0.67 | 2 | 55073529 | 55074103 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118940499 | NA | coding | upstream | 49344 | 55000439 ~ 55024185 (+) |
| LOC110491832 | LOC106560753 | coding | upstream | 97380 | 54951901 ~ 54976149 (+) |
| spg11 | spg11 | coding | upstream | 128749 | 54852812 ~ 54944780 (+) |
| calml4b | calml4 | coding | upstream | 568933 | 54491725 ~ 54504596 (+) |
| cln6b | cln6 | coding | upstream | 586620 | 54474023 ~ 54486909 (+) |
| znf609a | LOC106560750 | coding | downstream | 167297 | 55241400 ~ 55426308 (+) |
| LOC110491849 | LOC106560749 | coding | downstream | 404444 | 55478547 ~ 55535685 (+) |
| myo9ab | LOC106560748 | coding | downstream | 518558 | 55592661 ~ 55819518 (+) |
| scamp2 | scamp2 | coding | downstream | 767342 | 55841445 ~ 55857300 (+) |
| LOC110491898 | map1a | coding | downstream | 787319 | 55861422 ~ 55931584 (+) |
| G160061 | NA | non-coding | upstream | 91045 | 54978910 ~ 54982484 (+) |
| G160045 | NA | non-coding | upstream | 131848 | 54941100 ~ 54941681 (+) |
| G159949 | NA | non-coding | upstream | 225561 | 54768824 ~ 54847968 (+) |
| G159940 | NA | non-coding | upstream | 311972 | 54761331 ~ 54761557 (+) |
| G159923 | NA | non-coding | upstream | 321032 | 54752167 ~ 54752497 (+) |
| G160184 | NA | non-coding | downstream | 111487 | 55185590 ~ 55205725 (+) |
| G160508 | NA | non-coding | downstream | 696264 | 55770367 ~ 55770752 (+) |
| G160381 | NA | non-coding | downstream | 753657 | 55827760 ~ 55829632 (+) |
| G160589 | NA | non-coding | downstream | 859024 | 55933127 ~ 55933810 (+) |
| G159889 | LOC106562215 | other | upstream | 344669 | 54728296 ~ 54728860 (+) |
| G159415 | NA | other | upstream | 720141 | 54352983 ~ 54353388 (+) |
| G158778 | LOC106560766 | other | upstream | 1051625 | 54021608 ~ 54021904 (+) |
| G156000 | LOC106560791 | other | upstream | 3249347 | 51816510 ~ 51824182 (+) |
| G155541 | NA | other | upstream | 3652407 | 51420847 ~ 51421122 (+) |
| G160569 | NA | other | downstream | 872040 | 55946143 ~ 55947245 (+) |
| G161687 | NA | other | downstream | 1170941 | 56245044 ~ 56252598 (+) |
| G162130 | NA | other | downstream | 1974211 | 57048314 ~ 57053642 (+) |
| G163513 | LOC106561046 | other | downstream | 2854047 | 57928150 ~ 57931991 (+) |
| G163660 | LOC106561040 | other | downstream | 3141574 | 58215677 ~ 58216383 (+) |
