G161100


Basic Information

Item Value
gene id G161100
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 55423239 ~ 55426171 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU183764
aggagaagaggtgggGGATGAACCAAAACAAAACCTAGCaataaaaaaagaagaagctGTAAACATCTTTCTTTCAAGTACCGATGACTGATACCGAGCCACTGCTCTGGGGGCGGGGCTGAGTGTGATAGGGCAGGGGAGGTTTAGGGGGCAGGGTTATGAATAGAGAACAGGAAGAGGACATCCCACACAAGAACATTCCCTCCTCCCCCGGCGGGAGGAACACAAGGATCGACTACCCAAGCACCATTTGAGACGACGCCTCAACCATGGCTGCCCGTGGGAGTATGATCAACAAGTCATTTCTCTGGCTGGCGGGTGTCAACGTACTAAAAAAAAAGATCCGCAAAACTAGATTCTCGAAAAATAAAATCAAGTGCTTTTTTCCCCTTCCCCTCATCATTTTTAACAGCCTGCCACCAGCACAGGGTATCTATCTGGTTTAACAATGAGACGTAGAACAGCAGAAAATGACATTATTACTATATGACCTCACCCAACGTCCGTCTCACTCTGTACAGACTGATTAAAACCAAAACACTAACTCCTCCCCCATTGTATTATGGACACATGTCAACAACAGAAAAATCTGTGCCAGTATTAATCTGTGCCAGTATCCAATCATGGCTGAGCATTAACAGTCATGTGGTGAGAAAATAATgctaccccccccctcccccaacgtaaaaaaaaaaaaaaaaaaaaacttttcacgACACTCACCTTGTACTTTAGAAAAAAATGCGCACACCCTTGAAATAACACCCCCATTAAAAGATTACAACcacaaataataataactgtAGCGACCCGTCTTTATAAACGGGGAGACTTCACCACGTTTGCGTCACAGTcagggctacgggccagaaggttCAGGGATTTCCGACCACCACGGACGAGATTCTCCCTGCCGGTCTCATTACACTACAATCAGAGTCCGGCAGACAATGATCAGCTCGGGGGaaatcagattttcaacattttgatgctATATTTATAGAAAATATATGCAACTAATTTTCCAacaacaggtttctgtgccaatgcaccacacaaccaataaGCAAAGCATAACTGCACACGGATGACCAATTTCGGGCCCTTCAacatcatgttttgtgttttcaaCACCAAAATTAAATGGATTATGTCGATCTCGGCAAACGGAAAACACATCCCTCCCTACGTTGTACCCAGTATTGAaggcttggcttgacaatctcCCAATGTTATTAAAcattttggtgttttgtaacagatggcTCTTTCTAGTCCTCaaatgggctcctgagtggcgcaggggtcactacagaccctggttcgattccagggtgtatcacaaccggccgtgattgagagtccaatggggcggcgcacaattggccaggcATCATCCGGTtcgggggtaggccgtcattgtaaataagaatttgttcttaactgacttgcctagttaaagaaaaggttcaattaaataaaaaatagccAGTGCACAGTTCGGATGCCGGAATTATATCAGAGTGGACCGACGTGCAAAtatttaggctatattgaaGCGCTATGGCTCTAGTTGCACGAGGAATAGCCGTTCGGATCAGAGAGGAGGCAGAACGCAGGTTAATCTTTCCGGAAtcactgggcctgctgggagcatagGCCTATGTGGCTACATTATTATAGGACCacttgggagaatgatgatccGCAACAGACAGCCCATTCGGTATCAGACGGAAAAAATATAGCtagactggcctgctactgtgctTTTCTAGATccacaactgatccaaatggaATGAAAACATTCGTATAAACAGAGATTTTGCGCTGTTATTGAAATGACACTTCCACTACAGTTTACAGCCTAGAGTAGAATGTTGTAGTCACTTGAAAACATGAATGCAATTATTCAatgcattgtggtgttgtaggctagtctagggtaGAATCATTGTATTGTTCCTAAACAAGATCTATAGGGGAGCTTCATGTGCTCACGGTTCTTTCATGCGCAATGACACATCTGGCCTCTCCACTGCCTATCAGCTATTCCTCTATGTTCTTGTGGATTTATATAGAAAATTGGTGCAGCTCTGAATGATTTTTTTGGTGTGGTATGATTGCTAGTTAAcctattgcagatctggacaaacaatccacctaccactattgtcactatgaatggtgaATAGAGGGAAGGATCTACTATTAGACTATACCGACCTGTGGTACAGTAGGAAGTTAGCACATGGAAAAACATAGTGTATAAAAgaagtaccaaaacaccttgatataGGGGAGGAGCATGCAAGCAGATGAGGACAATTGGCTAGGATGGAAGAAATGATATAGTAAAACCTGCTAAATGGTGAATGTAAAATACCCTCCCCTGTgcctagtaaaaaaaaacaatacaaaaaccaCTAATCAAATGGATTATTTCAGACTTTCTGTGCTGCGCTCCTGAGCAAGCCGGATCCATGAAGGGTAATAAAAGCATCAGAGCAAATCAGATTGACTGTTTTTAGCGGGCGGGGGCGGGCGCTGTGCGGCGGTGTTGGGATCGATGGGCACCATTAAACGAGAGAGGGGTGGACCGGGTGGGAGAATCTGCTGTGTTTTTACCTCTCTATCAAACCTTCTGGACAGCAGCTCTGCTCTCAGCCTGTCTCGCTCCCGTCCTCTACTTTGTCTGTCGCGGCAGAAAGTAATCATGTGCCAACTTCCCCAGCCAACAAACTGCATCCACGATCGGCATCTCGTGGAACCCGAAAAAACAACGACAACAAAGGAGTGAAGGTTACAATGACATGTTGACATGTGACATTGTTTTCCT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU183764 True 2841 lncRNA 0.44 2 55423239 55426171

Neighbor

gene id symbol gene type direction distance location
si:ch211-284k5.2 LOC106560792 coding downstream 422205 54978917 ~ 55001034 (-)
ciao2a fam96a coding downstream 571095 54847592 ~ 54852144 (-)
LOC110491804 LOC106560756 coding downstream 898239 54510925 ~ 54525000 (-)
fem1b fem1b coding downstream 960402 54458665 ~ 54462837 (-)
coro2bb coro2b coding downstream 1083404 54303365 ~ 54339835 (-)
LOC110491875 NA coding upstream 249878 55676049 ~ 55698528 (-)
mpi LOC106560745 coding upstream 401585 55827756 ~ 55840888 (-)
LOC110491905 ppip5k1 coding upstream 509478 55935649 ~ 56006747 (-)
LOC110491965 LOC106561100 coding upstream 641376 56067547 ~ 56084173 (-)
LOC110491985 LOC106561098 coding upstream 665041 56091212 ~ 56136350 (-)
G160787 NA non-coding downstream 447122 54967731 ~ 54976117 (-)
G160745 NA non-coding downstream 521790 54901133 ~ 54901449 (-)
G159939 NA non-coding downstream 662376 54760579 ~ 54760863 (-)
G159924 NA non-coding downstream 670518 54752406 ~ 54752721 (-)
G161178 NA non-coding upstream 122360 55548531 ~ 55549486 (-)
G161226 NA non-coding upstream 189203 55615374 ~ 55615717 (-)
G161396 LOC106593556 non-coding upstream 389721 55815892 ~ 55819433 (-)
G161371 NA non-coding upstream 405961 55832132 ~ 55857297 (-)
G159890 LOC106562215 other downstream 694379 54728299 ~ 54728860 (-)
ambra1b LOC106560763 other downstream 1154886 54213602 ~ 54268394 (-)
cd59 cd59-2 other downstream 1451900 53969443 ~ 53971367 (-)
G159120 NA other downstream 1565687 53856686 ~ 53857552 (-)
snx33 snx33 other downstream 2310948 53032902 ~ 53112547 (-)
G161823 NA other upstream 875184 56301355 ~ 56302095 (-)
G162657 NA other upstream 1401125 56827296 ~ 56830576 (-)
G162745 NA other upstream 1688396 57114567 ~ 57117150 (-)
G162897 NA other upstream 1814108 57240279 ~ 57241372 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location