Gene
RNA
| Item | Value |
|---|---|
| gene id | G161178 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 55548531 ~ 55549486 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| Transposable element Tc1 transposase |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU183859 | True | 893 | lncRNA | 0.49 | 2 | 55548531 | 55549486 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| si:ch211-284k5.2 | LOC106560792 | coding | downstream | 547497 | 54978917 ~ 55001034 (-) |
| ciao2a | fam96a | coding | downstream | 696387 | 54847592 ~ 54852144 (-) |
| LOC110491804 | LOC106560756 | coding | downstream | 1023531 | 54510925 ~ 54525000 (-) |
| fem1b | fem1b | coding | downstream | 1085694 | 54458665 ~ 54462837 (-) |
| coro2bb | coro2b | coding | downstream | 1208696 | 54303365 ~ 54339835 (-) |
| LOC110491875 | NA | coding | upstream | 126563 | 55676049 ~ 55698528 (-) |
| mpi | LOC106560745 | coding | upstream | 278270 | 55827756 ~ 55840888 (-) |
| LOC110491905 | ppip5k1 | coding | upstream | 386163 | 55935649 ~ 56006747 (-) |
| LOC110491965 | LOC106561100 | coding | upstream | 518061 | 56067547 ~ 56084173 (-) |
| LOC110491985 | LOC106561098 | coding | upstream | 541726 | 56091212 ~ 56136350 (-) |
| G161100 | NA | non-coding | downstream | 122360 | 55423239 ~ 55426171 (-) |
| G160787 | NA | non-coding | downstream | 572414 | 54967731 ~ 54976117 (-) |
| G160745 | NA | non-coding | downstream | 647082 | 54901133 ~ 54901449 (-) |
| G159939 | NA | non-coding | downstream | 787668 | 54760579 ~ 54760863 (-) |
| G161226 | NA | non-coding | upstream | 65888 | 55615374 ~ 55615717 (-) |
| G161396 | LOC106593556 | non-coding | upstream | 266406 | 55815892 ~ 55819433 (-) |
| G161371 | NA | non-coding | upstream | 282646 | 55832132 ~ 55857297 (-) |
| G161411 | NA | non-coding | upstream | 308870 | 55858356 ~ 55858644 (-) |
| G159890 | LOC106562215 | other | downstream | 819671 | 54728299 ~ 54728860 (-) |
| ambra1b | LOC106560763 | other | downstream | 1280178 | 54213602 ~ 54268394 (-) |
| cd59 | cd59-2 | other | downstream | 1577192 | 53969443 ~ 53971367 (-) |
| G159120 | NA | other | downstream | 1690979 | 53856686 ~ 53857552 (-) |
| snx33 | snx33 | other | downstream | 2436240 | 53032902 ~ 53112547 (-) |
| G161823 | NA | other | upstream | 751869 | 56301355 ~ 56302095 (-) |
| G162657 | NA | other | upstream | 1277810 | 56827296 ~ 56830576 (-) |
| G162745 | NA | other | upstream | 1565081 | 57114567 ~ 57117150 (-) |
| G162897 | NA | other | upstream | 1690793 | 57240279 ~ 57241372 (-) |
