G161396 (LOC106593556)


Basic Information

Item Value
gene id G161396
gene name LOC106593556
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 55815892 ~ 55819433 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU184096
tttgtttatttttatttttaccatagacatataatttatataataaaaaaaaagaaatattagACAAATTGCACCTTATACATACAACTGTGTCcagagtagcacacacacacaaaaagataCAATTGCTCAAGTTGGATTTTTGCTGTAGCACAAACATGAGTTTTTTTTTTGAGCCTGTAAAAAAACATTAAATATGATTAATATTATAGAAGGAGTCATACACAGGATAATATATCCTTTTAATTACAGGCTTTTTTCCCCCCCTCTTCAATGTACACTCGTAAGCATGATCATAAATacaatatacatactgtatataaaaataaCAACAAAACGACAAGAGAAAGCAGAGCATTGCCTTCCAGTGATAGGTACATTCACTTTAGCAGTACGCCAATGCCAGCCTTAGGGTGTACAAATCCCGTGCTTAGTGTGGGTTTTTGACCAGCATGAATGGTTATTTTCTCCCACGCCCCTCAACAACCCTCAGTGCTCCCCTCTCGAAACTGAACTTCTGAGTGCTCTTTCTGATaaccagggtcgtattcattagggcacaccgtagcaaaaagCGTTGCGACGTAAAACAAAAACAAGCGGTTCTTATTGGTAGTCAGTTCGGGtagtcccttcctgtttcagtcagttttcttTCATTCGGTGCCTAATGCATACAACCCAGGTTTGGTTGTGACTGAATCGAGGTGCCTGCTCCCTAAAATACCACCATGGTTCAGCTGCTTCACCCGAATAGTAGACAACAAGCAGCAAGTAAAGTCTCTAAAGGGTTTTGGGACACAGTGGAGAATCTGGATGGAACAACGCACACTGAAGAAGAGGCAAGCTTGTGACAAAACACATAGGGCTACATGAAATTCCCTATTCATTATGACGACTATTCTGCGATCAAGTCCTACACCTTTTCTATGTCAAGACTTTGATTGTGTTGTTTCAGATGTGTCCTTGTTGTATTGCATTGGATGGCAAGTACAGTACAGGAATGGCAAGACTATAATACTGATTTAACTCCAGGTTAAGTACTGGTGagaagagatagatagatagacagacagacaggtccccCTACAGGGCACATAGGATATTGCACGGTATAGAGAGTGAGAGTACAGCGGTATTTATCTTACAGTACCAGAGAGTTATCTTCTGTTGAAACACACTGGACAATTGAAACCGATTGCCTTTTCTCTGCGAGGCATTTAAATACACATTTAGCATGGAGTAAATGCTACTGTTCAGGAAGGCCCGGTAGTGAAGTGGATGGAAAGGTTCATTCATATTTTAACCAATGTCAAAATCAGAGGCGAAGGATTTGGCTGGCTCAAAGGTTGTATGGGACATACATAGCAGaggactgcgtgtgtgtgtgtgtgtctgtctgtctgtcgtaaAGGTTGGACTGTGTTGACATCAAATGAACAGAGCAGTAGTgataaccaaccaaccacacacacacctcttggtACAGATAGgcgataaaaatgtattttgtctcAACAAAATCCCCCTTACCACGCAAGTAAAGCTGACAATAGCCTCAATGGCAActttaacaacaacaataatgaaACACCAATAAAAAGACAAAATAAATTCAAGTCCTGATTTGGTTACTCTTAACACTGATGTCTCAGAACAACGTAGAATTGTGTGTGGGGACGGGGGACAGGGGACGGGGACAGACAAACGACGGATGGAGGAGAAAggcattacaatacattatggCTGATAAACATTGAACACCGCAGTCGCGGTGTCAAACACAATGGCAACAGTGATGTGATGATCGTAAGTGTCTGAAAGTCAATCCCTTGTTGCACCACATGCATTATTTCACATGAGAAGAAGTGGCACCAACTGAACACATCAAGTGGCTCTGTTAAAATGGTATGTGCTATCAGGGATACTTTGGACGTCCCTAccccccattgaagttgaaataaaaaaaatggttacGTTTCAGTAAGGTTTACGGTTATAGTgcgggttaggataagggttagtgtttagggtagggacgtcccaaagATCCCGGATAGCACCAACCTTGTTAaaaatcaacaaaacaaaacGACAAACAAAACCATAACCTGAATCCCATAAACTTCACTTTGCAAAAGACTCCTGACAAGACACAGTTATTATAAACACTGGACGACCCAGTAGCACTGGAGTTCCTTCTATTTACATATTtttaataacataataataatagtaatgtcATATTACACATTTATAACATATCACCACAGTAGTCTCTTGAACAGGCATAGGAAACAAGTGTAATGAAGGAGCATGCAGCCTTGTGGAGAGGCTGTATCGTGTAAACTTGAAAGCAGATGTGAGAGTAGCGGAGTGCTTCTTATCAAAATGGTGGACAGTActctcagtcagtcactctgcttTTGAGTGGCTCAAACCACTTTAGACCTCCACTCAAAAGATGGCGCTGTAGCTTCTATTTTTTTTCCATTCTCTCCAGCCCCTCTGTGCCCCTGAGGCTCCAGCAGGGGTCAAGGGGCTTGGAGGTCAAAGTTTAAAAAGACAGGTGAGTCAAGGCAGCCGCCCTCATCCTTTTCCtcactctccgtctctctctcgcccatTTATTCCTCTACAGCCTCCTGCCACGCCTCCATCTTCGTTCCCGAGGCTTCCTATTTCTTTCGTTCATtcatcccatctctctttctccatctccgcTCATCATCTTTCACTTcactctccgtatctctctcgcCATTTTATTCCTCTACAGCCTCCTGACATGCCTCCATCTTCGTTCCCGAGGCTTCCTATTTCTTTCGTTCATtcatcccatctctctttctccctctccgttCATCATCTTTCACTTCACTCTCAGCCCACTCCCACCAAGCGGATGGCGCCGAACTGCATCGTGGGACGGCGGCAGACCTCCAAGGCAAGACTGGCACAGGGAAGAAGTAGAGAGGTGAGCACAGCTAGGGGAGGACAGAAGTGAGAGATGGATGCCTACATGGCCCATtccagccctgtttcactcccttcctcccttcctcataCACATTCTATCGGCATGGGGGATAGAAGGCGGTTCGGATGTCTCGTCTCTCCGCCACTCTCCCTCACACCATAAACTCGTTACTGCCATACAGAACCAGCTGTTGGGGCGGCGAGCTGAAGTCAGACTCCCTCCTGTGGCCTTCGGGGGCTTCACGCGGCGAGCTCCTACTCAGCCGGAGGCGGTGGCGACTCTTCACCCCCACAGTGCCCCTCGGGTCCCCCTCAGACTGCACTACGGGGACTCCTAGGCCCGATGAGCAGGAGGCGAGCAGGGGGCCGGATGAGGAGGAGCGGAAGCGGTAGTTGGGGGAAGGAGGGATAACcgaggaggaggggtggtaggaggaagaggagagcgagGAAGAGGCGGTGGACAAGATGGAGTCGACCGAGTCCACAGAGTCGGGTTGTCTCCGGAGGCCGCGGCGGCTCTTGGCTTCAGGCTTCCGGG

Function

NR:

description
unconventional myosin-IXa-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU184096 True 3520 lncRNA 0.46 2 55815892 55819433

Neighbor

gene id symbol gene type direction distance location
LOC110491875 NA coding downstream 117364 55676049 ~ 55698528 (-)
si:ch211-284k5.2 LOC106560792 coding downstream 814858 54978917 ~ 55001034 (-)
ciao2a fam96a coding downstream 963748 54847592 ~ 54852144 (-)
LOC110491804 LOC106560756 coding downstream 1290892 54510925 ~ 54525000 (-)
fem1b fem1b coding downstream 1353055 54458665 ~ 54462837 (-)
mpi LOC106560745 coding upstream 8323 55827756 ~ 55840888 (-)
LOC110491905 ppip5k1 coding upstream 116216 55935649 ~ 56006747 (-)
LOC110491965 LOC106561100 coding upstream 248114 56067547 ~ 56084173 (-)
LOC110491985 LOC106561098 coding upstream 271779 56091212 ~ 56136350 (-)
LOC110492010 LOC106561097 coding upstream 352112 56171545 ~ 56177565 (-)
G161226 NA non-coding downstream 200175 55615374 ~ 55615717 (-)
G161178 NA non-coding downstream 266406 55548531 ~ 55549486 (-)
G161100 NA non-coding downstream 389721 55423239 ~ 55426171 (-)
G160787 NA non-coding downstream 839775 54967731 ~ 54976117 (-)
G161371 NA non-coding upstream 12699 55832132 ~ 55857297 (-)
G161411 NA non-coding upstream 38923 55858356 ~ 55858644 (-)
G161412 NA non-coding upstream 39465 55858898 ~ 55859175 (-)
G161484 NA non-coding upstream 198030 56017463 ~ 56017842 (-)
G159890 LOC106562215 other downstream 1087032 54728299 ~ 54728860 (-)
ambra1b LOC106560763 other downstream 1547539 54213602 ~ 54268394 (-)
cd59 cd59-2 other downstream 1844553 53969443 ~ 53971367 (-)
G159120 NA other downstream 1958340 53856686 ~ 53857552 (-)
snx33 snx33 other downstream 2703601 53032902 ~ 53112547 (-)
G161823 NA other upstream 481922 56301355 ~ 56302095 (-)
G162657 NA other upstream 1007863 56827296 ~ 56830576 (-)
G162745 NA other upstream 1295134 57114567 ~ 57117150 (-)
G162897 NA other upstream 1420846 57240279 ~ 57241372 (-)

Expression


Co-expression Network