G160381


Basic Information

Item Value
gene id G160381
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 55827760 ~ 55829632 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU183011
AGTACAGAATGTTTTATTTAGGTTTACATACAGACACTCTAGAGAGCCATGCTACTGTAGTATAGTCAAATGCAAAACCATGCTCTCATTCCAGCTCCTATTGAAAAATAAGTAAAACCGTTATACCTTTAACCCATAGACTAGTTTGCAATCAAACCTACAGTAGTAGgtgtctgtgtatatatatatatatatatattttttttaaactattgtaGTGCAAACCGTTCATGTAATTTAAAATATCCTGGACAACACCAGTTGGCATACAAACAAGTTCAGAACAAATTATTTAAGTTATCGTTCTGTTCCCGTCCTTCATTCACAAATCGTAAGTAGATCATCGCTGTTCAATTGAAAGCACCAGGGTCATGCTCATTAAGCACAAAACAGAAACGGGGAGGTACAATCAGTACTTCTCCAATAAGAAACTAATTTTCCTTTTGCTACGATGTGCTCTAATGAACACCAACCAGGAGACATGCCTGACCCAACAGAGCTTCATTCAAAATGAATGAACAAACATACAAAATTTCACTTTTTTGACCTTTGGGGAAAGCTATTTTGAGTGTTTGAGAGACTACATTGCAGTCTGCGACTACAGACTGTCTGCTATACAAGTTATaatcagtagtcatttaggatGCAAGATGAGTCGGCAGTCTACAGTCACCAACTGCAATGCAGTCCCTCTCAAACACCAACTTTGTATCCTGTAATAGAGTGTGAGGTGTTACCATTGACACAGTACAGCTCACCTTCAGTCCAGACTACTGCTGAATGCATTTCTGTTGAATTGCATGGTCACATGATGCTTAAGCCTTACAGCATACATTTTCTTCAACTAAACCAACTTCAATGTTGGTGATCCAGCTGAAGAAAAGGCCTCCCCATACAGTAGCTATACATTCTTACTCTATGCTCTAGTTGTAAGTACACTATGTATGCGGCGCGCAAATATGCATGCGTGAATGGGCAGGTGCCTTTGTTCCGCAAACATGCACAGGAATCTCAGCATACTGTAAAACGCCAAATGTTCCCAATACAGCTGATATATTTAAAATACTCTGTTTTTGTTATGATGCATTGTCTTAAAAGCACTACTATTGAACAGAAGATTTCCCCCactgaaaaaaaaaaagcttAGAGGTAATTAATTACAACATGCTCAATTAAAAAAACCATCAGCAACGACAGAGTATGTGACACTTACAGCGAGATGTGAGCTGAGGCATACTGTACCAATGAAAACTCCATAATCACCGATACTGTGTAAACCTTCACAGAAACATGGGCCGAATAAAAAGGACCACAGCGAGTACACAAACCACAAGGGcgtgtatcacacacacacaagctgtgcATGTTCCTGTACCTGTCAGGGCGATTGTCTGAGAAAAATGAATGGAACTGCACATAGACTACAGTTAAAGAGGGGTTAAAACTGTTAGTAGGCCATCTTCAGTCTATCACTACTGGCCTTATGTCAGGGGACACCCCGGCATGACGAATGGGAGAACCACGGGTTGGGTTGATGTTGGTAGGTGACATTATCAGAAGGCCTGGGGCTACAGGAGACTGCAGGCCCGGTACATAGTCATTCCGGAGGGGGAGGTGATGTGAAGGGAGACGCTCTCATTGGCTGAGATGAAGAGGACAGTGCCCCGGCTCAGGGTGATGTCAGAGAGGGCAGCGGCGGAGGTGCCGGTGGCCTCGCCCTCAATCACCAGCAGGATGCCCGCACAGTCCACCGGGGCCACCGTGTACTGCCTGACTGAGT
>TU183012
AGTACAGAATGTTTTATTTAGGTTTACATACAGACACTCTAGAGAGCCATGCTACTGTAGTATAGTCAAATGCAAAACCATGCTCTCATTCCAGCTCCTATTGAAAAATAAGTAAAACCGTTATACCTTTAACCCATAGACTAGTTTGCAATCAAACCTACAGTAGTAGgtgtctgtgtatatatatatatatatattttttttaaactattgtaGTGCAAACCGTTCATGTAATTTAAAATATCCTGGACAACACCAGTTGGCATACAAACAAGTTCAGAACAAATTATTTAAGTTATCGTTCTGTTCCCGTCCTTCATTCACAAATCGTAAGTAGATCATCGCTGTTCAATTGAAAGCACCAGGGTCATGCTCATTAAGCACAAAACAGAAACGGGGAGGTACAATCAGTACTTCTCCAATAAGAAACTAATTTTCCTTTTGCTACGATGTGCTCTAATGAACACCAACCAGGAGACATGCCTGACCCAACAGAGCTTCATTCAAAATGAATGAACAAACATACAAAATTTCACTTTTTTGACCTTTGGGGAAAGCTATTTTGAGTGTTTGAGAGACTACATTGCAGTCTGCGACTACAGACTGTCTGCTATACAAGTTATaatcagtagtcatttaggatGCAAGATGAGTCGGCAGTCTACAGTCACCAACTGCAATGCAGTCCCTCTCAAACACCAACTTTGTATCCTGTAATAGAGTGTGAGGTGTTACCATTGACACAGTACAGCTCACCTTCAGTCCAGACTACTGCTGAATGCATTTCTGTTGAATTGCATGGTCACATGATGCTTAAGCCTTACAGCATACATTTTCTTCAACTAAACCAACTTCAATGTTGGTGATCCAGCTGAAGAAAAGGCCTCCCCATACAGTAGCTATACATTCTTACTCTATGCTCTAGTTGTAAGTACACTATGTATGCGGCGCGCAAATATGCATGCGTGAATGGGCAGGTGCCTTTGTTCCGCAAACATGCACAGGAATCTCAGCATACTGTAAAACGCCAAATGTTCCCAATACAGCTGATATATTTAAAATACTCTGTTTTTGTTATGATGCATTGTCTTAAAAGCACTACTATTGAACAGAAGATTTCCCCCactgaaaaaaaaaaagcttAGAGGTAATTAATTACAACATGCTCAATTAAAAAAACCATCAGCAACGACAGAGTATGTGACACTTACAGCGAGATGTGAGCTGAGGCATACTGTACCAATGAAAACTCCATAATCACCGATACTGTGTAAACCTTCACAGAAACATGGGCCGAATAAAAAGGACCACAGCGAGTACACAAACCACAAGGGcgtgtatcacacacacacaagctgtgcATGTTCCTGTACCTGTCAGGGCGATTGTCTGAGAAAAATGAATGGAACTGCACATAGACTACAGTTAAAGAGGGGTTAAAACTGTTAGTAGGCCATCTTCAGTCTATCACTACTGGCCTTATGTCAGGGGACACCCCGGCATGACGAATGGGAGAACCACGGGTTGGGTTGATGTTGGTAGGTGACATTATCAGAAGGCCTGGGGCTACAGGAGACTGCAGGCCCGGTACATAGTCATTCCGGAGGGGGAGGTGATGTGAAGGGAGACGCTCTCATTGGCTGAGATGAAGAGGACAGTGCCCCGGCTCAGGGTGATGTCAGAGAGGGCAGCGGCGGAGGTGCCGGTGGCCTCGCCCTCAATCACCAGCAGGATGCCCGCACAGTCCACCGGGGCCACCGTGTACTGCCTGACTGAGT
>TU183013
AGTACAGAATGTTTTATTTAGGTTTACATACAGACACTCTAGAGAGCCATGCTACTGTAGTATAGTCAAATGCAAAACCATGCTCTCATTCCAGCTCCTATTGAAAAATAAGTAAAACCGTTATACCTTTAACCCATAGACTAGTTTGCAATCAAACCTACAGTAGTAGgtgtctgtgtatatatatatatatatatatatattttttttaaactattgtaGTGCAAACCGTTCATGTAATTTAAAATATCCTGGACAACACCAGTTGGCATACAAACAAGTTCAGAACAAATTATTTAAGTTATCGTTCTGTTCCCGTCCTTCATTCACAAATCGTAAGTAGATCATCGCTGTTCAATTGAAAGCACCAGGGTCATGCTCATTAAGCACAAAACAGAAACGGGGAGGTACAATCAGTACTTCTCCAATAAGAAACTAATTTTCCTTTTGCTACGATGTGCTCTAATGAACACCAACCAGGAGACATGCCTGACCCAACAGAGCTTCATTCAAAATGAATGAACAAACATACAAAATTTCACTTTTTTGACCTTTGGGGAAAGCTATTTTGAGTGTTTGAGAGACTACATTGCAGTCTGCGACTACAGACTGTCTGCTATACAAGTTATaatcagtagtcatttaggatGCAAGATGAGTCGGCAGTCTACAGTCACCAACTGCAATGCAGTCCCTCTCAAACACCAACTTTGTATCCTGTAATAGAGTGTGAGGTGTTACCATTGACACAGTACAGCTCACCTTCAGTCCAGACTACTGCTGAATGCATTTCTGTTGAATTGCATGGTCACATGATGCTTAAGCCTTACAGCATACATTTTCTTCAACTAAACCAACTTCAATGTTGGTGATCCAGCTGAAGAAAAGGCCTCCCCATACAGTAGCTATACATTCTTACTCTATGCTCTAGTTGTAAGTACACTATGTATGCGGCGCGCAAATATGCATGCGTGAATGGGCAGGTGCCTTTGTTCCGCAAACATGCACAGGAATCTCAGCATACTGTAAAACGCCAAATGTTCCCAATACAGCTGATATATTTAAAATACTCTGTTTTTGTTATGATGCATTGTCTTAAAAGCACTACTATTGAACAGAAGATTTCCCCCactgaaaaaaaaaaagcttAGAGGTAATTAATTACAACATGCTCAATTAAAAAAACCATCAGCAACGACAGAGTATGTGACACTTACAGCGAGATGTGAGCTGAGGCATACTGTACCAATGAAAACTCCATAATCACCGATACTGTGTAAACCTTCACAGAAACATGGGCCGAATAAAAAGGACCACAGCGAGTACACAAACCACAAGGGcgtgtatcacacacacacaagctgtgcATGTTCCTGTACCTGTCAGGGCGATTGTCTGAGAAAAATGAATGGAACTGCACATAGACTACAGTTAAAGAGGGGTTAAAACTGTTAGTAGGCCATCTTCAGTCTATCACTACTGGCCTTATGTCAGGGGACACCCCGGCATGACGAATGGGAGAACCACGGGTTGGGTTGATGTTGGTAGGTGACATTATCAGAAGGCCTGGGGCTACAGGAGACTGCAGGCCCGGTACATAGTCATTCCGGAGGGGGAGGTGATGTGAAGGGAGACGCTCTCATTGGCTGAGATGAAGAGGACAGTGCCCCGGCTCAGGGTGATGTCAGAGAGGGCAGCGGCGGAGGTGCCGGTGGCCTCGCCCTCAATCACCAGCAGGATGCCCGCACAGTCCACCGGGGCCACCGTGTACTGCCTGACTGAGT
>TU183015
AGTACAGAATGTTTTATTTAGGTTTACATACAGACACTCTAGAGAGCCATGCTACTGTAGTATAGTCAAATGCAAAACCATGCTCTCATTCCAGCTCCTATTGAAAAATAAGTAAAACCGTTATACCTTTAACCCATAGACTAGTTTGCAATCAAACCTACAGTAGTAGgtgtctgtgtatatatatatatatattttttttaaactattgtaGTGCAAACCGTTCATGTAATTTAAAATATCCTGGACAACACCAGTTGGCATACAAACAAGTTCAGAACAAATTATTTAAGTTATCGTTCTGTTCCCGTCCTTCATTCACAAATCGTAAGTAGATCATCGCTGTTCAATTGAAAGCACCAGGGTCATGCTCATTAAGCACAAAACAGAAACGGGGAGGTACAATCAGTACTTCTCCAATAAGAAACTAATTTTCCTTTTGCTACGATGTGCTCTAATGAACACCAACCAGGAGACATGCCTGACCCAACAGAGCTTCATTCAAAATGAATGAACAAACATACAAAATTTCACTTTTTTGACCTTTGGGGAAAGCTATTTTGAGTGTTTGAGAGACTACATTGCAGTCTGCGACTACAGACTGTCTGCTATACAAGTTATaatcagtagtcatttaggatGCAAGATGAGTCGGCAGTCTACAGTCACCAACTGCAATGCAGTCCCTCTCAAACACCAACTTTGTATCCTGTAATAGAGTGTGAGGTGTTACCATTGACACAGTACAGCTCACCTTCAGTCCAGACTACTGCTGAATGCATTTCTGTTGAATTGCATGGTCACATGATGCTTAAGCCTTACAGCATACATTTTCTTCAACTAAACCAACTTCAATGTTGGTGATCCAGCTGAAGAAAAGGCCTCCCCATACAGTAGCTATACATTCTTACTCTATGCTCTAGTTGTAAGTACACTATGTATGCGGCGCGCAAATATGCATGCGTGAATGGGCAGGTGCCTTTGTTCCGCAAACATGCACAGGAATCTCAGCATACTGTAAAACGCCAAATGTTCCCAATACAGCTGATATATTTAAAATACTCTGTTTTTGTTATGATGCATTGTCTTAAAAGCACTACTATTGAACAGAAGATTTCCCCCactgaaaaaaaaaaagcttAGAGGTAATTAATTACAACATGCTCAATTAAAAAAACCATCAGCAACGACAGAGTATGTGACACTTACAGCGAGATGTGAGCTGAGGCATACTGTACCAATGAAAACTCCATAATCACCGATACTGTGTAAACCTTCACAGAAACATGGGCCGAATAAAAAGGACCACAGCGAGTACACAAACCACAAGGGcgtgtatcacacacacacaagctgtgcATGTTCCTGTACCTGTCAGGGCGATTGTCTGAGAAAAATGAATGGAACTGCACATAGACTACAGTTAAAGAGGGGTTAAAACTGTTAGTAGGCCATCTTCAGTCTATCACTACTGGCCTTATGTCAGGGGACACCCCGGCATGACGAATGGGAGAACCACGGGTTGGGTTGATGTTGGTAGGTGACATTATCAGAAGGCCTGGGGCTACAGGAGACTGCAGGCCCGGTACATAGTCATTCCGGAGGGGGAGGTGATGTGAAGGGAGACGCTCTCATTGGCTGAGATGAAGAGGACAGTGCCCCGGCTCAGGGTGATGTCAGAGAGGGCAGCGGCGGAGGTGCCGGTGGCCTCGCCCTCAATCACCAGCAGGATGCCCGCACAGTCCACCGGGGCCACCGTGTACTGCCTGACTGAGT
>TU183016
AGTACAGAATGTTTTATTTAGGTTTACATACAGACACTCTAGAGAGCCATGCTACTGTAGTATAGTCAAATGCAAAACCATGCTCTCATTCCAGCTCCTATTGAAAAATAAGTAAAACCGTTATACCTTTAACCCATAGACTAGTTTGCAATCAAACCTACAGTAGTAGgtgtctgtgtatatatatatatatatatatattttttttaaactattgtaGTGCAAACCGTTCATGTAATTTAAAATATCCTGGACAACACCAGTTGGCATACAAACAAGTTCAGAACAAATTATTTAAGTTATCGTTCTGTTCCCGTCCTTCATTCACAAATCGTAAGTAGATCATCGCTGTTCAATTGAAAGCACCAGGGTCATGCTCATTAAGCACAAAACAGAAACGGGGAGGTACAATCAGTACTTCTCCAATAAGAAACTAATTTTCCTTTTGCTACGATGTGCTCTAATGAACACCAACCAGGAGACATGCCTGACCCAACAGAGCTTCATTCAAAATGAATGAACAAACATACAAAATTTCACTTTTTTGACCTTTGGGGAAAGCTATTTTGAGTGTTTGAGAGACTACATTGCAGTCTGCGACTACAGACTGTCTGCTATACAAGTTATaatcagtagtcatttaggatGCAAGATGAGTCGGCAGTCTACAGTCACCAACTGCAATGCAGTCCCTCTCAAACACCAACTTTGTATCCTGTAATAGAGTGTGAGGTGTTACCATTGACACAGTACAGCTCACCTTCAGTCCAGACTACTGCTGAATGCATTTCTGTTGAATTGCATGGTCACATGATGCTTAAGCCTTACAGCATACATTTTCTTCAACTAAACCAACTTCAATGTTGGTGATCCAGCTGAAGAAAAGGCCTCCCCATACAGTAGCTATACATTCTTACTCTATGCTCTAGTTGTAAGTACACTATGTATGCGGCGCGCAAATATGCATGCGTGAATGGGCAGGTGCCTTTGTTCCGCAAACATGCACAGGAATCTCAGCATACTGTAAAACGCCAAATGTTCCCAATACAGCTGATATATTTAAAATACTCTGTTTTTGTTATGATGCATTGTCTTAAAAGCACTACTATTGAACAGAAGATTTCCCCCactgaaaaaaaaaaagcttAGAGGTAATTAATTACAACATGCTCAATTAAAAAAACCATCAGCAACGACAGAGTATGTGACACTTACAGCGAGATGTGAGCTGAGGCATACTGTACCAATGAAAACTCCATAATCACCGATACTGTGTAAACCTTCACAGAAACATGGGCCGAATAAAAAGGACCACAGCGAGTACACAAACCACAAGGGcgtgtatcacacacacacaagctgtgcATGTTCCTGTACCTGTCAGGGCGATTGTCTGAGAAAAATGAATGGAACTGCACATAGACTACAGTTAAAGAGGGGTTAAAACTGTTAGTAGGCCATCTTCAGTCTATCACTACTGGCCTTATGTCAGGGGACACCCCGGCATGACGAATGGGAGAACCACGGGTTGGGTTGATGTTGGTAGGTGACATTATCAGAAGGCCTGGGGCTACAGGAGACTGCAGGCCCGGTACATAGTCATTCCGGAGGGGGAGGTGATGTGAAGGGAGACGCTCTCATTGGCTGAGATGAAGAGGACAGTGCCCCGGCTCAGGGTGATGTCAGAGAGGGCAGCGGCGGAGGTGCCGGTGGCCTCGCCCTCAATCACCAGCAGGATGCCCGCACAGTCCACCGGGGCCACCGTGTACTGCCTGACTGAGT

Function

NR:

description
PREDICTED: mannose-6-phosphate isomerase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU183011 False 1780 lncRNA 0.39 2 55827760 55829632
TU183012 False 1778 lncRNA 0.43 2 55827760 55829632
TU183013 False 1784 lncRNA 0.43 2 55827760 55829632
TU183015 False 1776 lncRNA 0.47 2 55827760 55829632
TU183016 True 1782 lncRNA 0.43 2 55827760 55829632

Neighbor

gene id symbol gene type direction distance location
myo9ab LOC106560748 coding upstream 8242 55592661 ~ 55819518 (+)
LOC110491849 LOC106560749 coding upstream 292075 55478547 ~ 55535685 (+)
znf609a LOC106560750 coding upstream 401452 55241400 ~ 55426308 (+)
LOC118940499 NA coding upstream 803575 55000439 ~ 55024185 (+)
LOC110491832 LOC106560753 coding upstream 851611 54951901 ~ 54976149 (+)
scamp2 scamp2 coding downstream 11813 55841445 ~ 55857300 (+)
LOC110491898 map1a coding downstream 31790 55861422 ~ 55931584 (+)
acanb LOC106561101 coding downstream 202858 56032490 ~ 56056380 (+)
LOC110491996 LOC106561096 coding downstream 316829 56146461 ~ 56170964 (+)
LOC110492043 catsper2 coding downstream 378196 56207828 ~ 56229077 (+)
G160508 NA non-coding upstream 57008 55770367 ~ 55770752 (+)
G160184 NA non-coding upstream 622035 55185590 ~ 55205725 (+)
G160082 NA non-coding upstream 750345 55010209 ~ 55077415 (+)
G160127 NA non-coding upstream 753657 55073529 ~ 55074103 (+)
G160589 NA non-coding downstream 103495 55933127 ~ 55933810 (+)
G160619 NA non-coding downstream 170751 56000383 ~ 56001041 (+)
G160635 NA non-coding downstream 189710 56019342 ~ 56019605 (+)
G161494 NA non-coding downstream 202076 56031708 ~ 56031913 (+)
G161559 NA non-coding downstream 260187 56089819 ~ 56090069 (+)
G159889 LOC106562215 other upstream 1098900 54728296 ~ 54728860 (+)
G159415 NA other upstream 1474372 54352983 ~ 54353388 (+)
G158778 LOC106560766 other upstream 1805856 54021608 ~ 54021904 (+)
G156000 LOC106560791 other upstream 4003578 51816510 ~ 51824182 (+)
G155541 NA other upstream 4406638 51420847 ~ 51421122 (+)
G160569 NA other downstream 116511 55946143 ~ 55947245 (+)
G161687 NA other downstream 415412 56245044 ~ 56252598 (+)
G162130 NA other downstream 1218682 57048314 ~ 57053642 (+)
G163513 LOC106561046 other downstream 2098518 57928150 ~ 57931991 (+)
G163660 LOC106561040 other downstream 2386045 58215677 ~ 58216383 (+)

Expression


Co-expression Network