XLOC_002123 (si:ch73-122g19.1)


Basic Information

Item Value
gene id XLOC_002123
gene name si:ch73-122g19.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 23441488 ~ 23443074 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004118
ATGCATAGAAAGAACAGAGAAAACACTGGTGATATCTACGAAAACCATGGAATAAGAGAGCAATCTGGACATTGGTTCACAGACTGCAACACAACGAGGATCCAGACATCTGAACTCAAAGGTACTGCACATAAATGTGACGacgaaaatataaaaaaagcaacaacctGGAGAATCCAAAAAGGAGGTAGACAAACCACTGATGATATTTATGAGAATGATGTTATAGGATGTATTTCTGGAGAAGAGATCAATGACAACACAATGAGAATCCAGTCATCTGAACTCACAGGAAATGATTTAGAGAGAATGAAAAGCTTCAGAGCAGCACTAGTGTGTTTGATCCTGCTATGTGTTCTTCTGCTGACTGCAGTTTTAGTGCTGAGTGTCTTCATCTATACAAACAGCATAAACTACACTGAAGAGAGACGCCAGCTACTAACCAACATTACAGAAGACAGAGCTAAGCTACTAACCAACATCACCAACCTCACAGAAAAGagtaatcagttattacaaaacaacacaaatctattgAATGAGACAGACCAGCTAAAATGGAAGAAAGAAAATCTTCTGAATCAGCTGAAAAAAATTCTGACTGGAGATGGGTGGACTTACAATCAGTCCAGTTTTTACTACAAGTCCAATATATCAAAGACCTGGATTGTAAGCAGAAGTGACTGTATAGCGAGAGGTGCAGATCTGATCATCATAAACAACCAACAGGAACAAGATTTTGTTATGAGAAAGTCTAATGTTGCTGCAGTCTGGATTGGTCTGAATGACATTATTGTTGAGGGCACATGGAGATGGGTTGATGGCAGTGCAATGAAAAATGATTTGAGCTTCTGGGCATCTGGATCTAATGAACCAAATGGAGACACAAATGAGAACTGTGTTGTGTCTGCTGATAAAGTGACAGAATGGCCTTATACATCAGGGTGGTCTGATGTCTCTTGTGAAAGAACATTTCAGTGGATCTGTGAGAAGAATATTTCACAACTCATATAA

Function

symbol description
si:ch73-122g19.1 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to several human genes including CLEC4C (C-type lectin domain family 4 member C) and CLEC4E (C-type lectin domain family 4 member E).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110411-239 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to several human genes including CLEC4C (C-type lectin domain family 4 member C) and CLEC4E (C-type lectin domain family 4 member E).

Ensembl:

ensembl_id ENSDARG00000069323

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004118 True 1014 mRNA 0.39 5 23441488 23443074

Neighbor

gene id symbol gene type direction distance location
XLOC_002122 CT827808.1 coding upstream 23541 23417833 ~ 23417947 (+)
XLOC_002121 LTN1 coding upstream 225609 23099365 ~ 23215879 (+)
XLOC_002120 slc25a1a coding upstream 372165 23060391 ~ 23069323 (+)
XLOC_002119 NA coding upstream 402198 23034329 ~ 23039290 (+)
XLOC_002118 si:dkey-175g6.2 coding upstream 414959 23022263 ~ 23026529 (+)
XLOC_002124 si:dkey-181c13.1 coding downstream 58952 23502026 ~ 23505767 (+)
XLOC_002125 zmp:0000000924 coding downstream 68742 23511816 ~ 23519898 (+)
XLOC_002126 zmp:0000000937 coding downstream 77878 23520952 ~ 23523315 (+)
XLOC_002127 CR847844.1 coding downstream 94502 23537576 ~ 23541888 (+)
XLOC_002128 NA coding downstream 99543 23542617 ~ 23544066 (+)
XLOC_002117 NA non-coding upstream 476062 22960289 ~ 22965426 (+)
XLOC_002116 FP102052.2 non-coding upstream 485118 22938231 ~ 22956370 (+)
XLOC_002111 AL807389.1 non-coding upstream 594084 22847272 ~ 22847404 (+)
XLOC_002131 NA non-coding downstream 145601 23588675 ~ 23591058 (+)
XLOC_002132 NA non-coding downstream 540233 23983307 ~ 23992917 (+)
XLOC_002134 NA non-coding downstream 653165 24096239 ~ 24096470 (+)
XLOC_002135 NA non-coding downstream 653981 24097055 ~ 24097310 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location