G161886


Basic Information

Item Value
gene id G161886
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 56361607 ~ 56362081 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU184644
cttagCGGGCTGTTGATACTCAAACATCCGCTGTCCCACTCCCCAACCAGCAGGTGGTGGATTGGCACTTGGTATCACAACAGTGCTGGAATTGGGAATTGCTCCTGCCTGTTGGACGTGGTTGTTTGGGCAGTGGTTTGGCCCAAGAGCCCTGGACCCTTGCACGCTGACGTTTATCCGACATCACATCGAGATGAGGACACCGATTGGAGGTCTGA

Function

NR:

description
alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU184644 True 218 lncRNA 0.55 2 56361607 56362081

Neighbor

gene id symbol gene type direction distance location
LOC110492043 catsper2 coding upstream 132530 56207828 ~ 56229077 (+)
LOC110491996 LOC106561096 coding upstream 190643 56146461 ~ 56170964 (+)
acanb LOC106561101 coding upstream 305227 56032490 ~ 56056380 (+)
LOC110491898 map1a coding upstream 430023 55861422 ~ 55931584 (+)
scamp2 scamp2 coding upstream 504307 55841445 ~ 55857300 (+)
LOC110492132 LOC106561087 coding downstream 124616 56486697 ~ 56497109 (+)
LOC110492152 LOC106584663 coding downstream 145555 56507636 ~ 56518535 (+)
LOC110492171 LOC106561080 coding downstream 206493 56568574 ~ 56620288 (+)
LOC110492185 LOC106561079 coding downstream 259358 56621439 ~ 56633187 (+)
LOC118944174 NA coding downstream 270645 56632726 ~ 56632853 (+)
G161866 NA non-coding upstream 24986 56336419 ~ 56336621 (+)
G161862 NA non-coding upstream 25690 56335629 ~ 56335917 (+)
G161858 NA non-coding upstream 26695 56334488 ~ 56334912 (+)
G161857 NA non-coding upstream 27991 56332972 ~ 56333616 (+)
G161821 NA non-coding upstream 60268 56300871 ~ 56301339 (+)
G161893 NA non-coding downstream 18542 56380623 ~ 56382309 (+)
G161949 LOC105006114 non-coding downstream 111679 56473760 ~ 56474977 (+)
G161956 NA non-coding downstream 142274 56504355 ~ 56504559 (+)
G161964 NA non-coding downstream 159653 56521734 ~ 56521968 (+)
G161987 NA non-coding downstream 185916 56547997 ~ 56597839 (+)
G161687 NA other upstream 109009 56245044 ~ 56252598 (+)
G160569 NA other upstream 414362 55946143 ~ 55947245 (+)
G159889 LOC106562215 other upstream 1632747 54728296 ~ 54728860 (+)
G159415 NA other upstream 2008219 54352983 ~ 54353388 (+)
G158778 LOC106560766 other upstream 2339703 54021608 ~ 54021904 (+)
G162130 NA other downstream 686233 57048314 ~ 57053642 (+)
G163513 LOC106561046 other downstream 1566069 57928150 ~ 57931991 (+)
G163660 LOC106561040 other downstream 1853596 58215677 ~ 58216383 (+)
G166131 lmod2 other downstream 3583627 59945708 ~ 59953165 (+)
G166878 NA other downstream 4153551 60515632 ~ 60515880 (+)

Expression


Co-expression Network