G162798



Basic Information


Item Value
gene id G162798
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 57014476 ~ 57015002 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU185650
atttatatttatttatttttgacacTTCATTCAGAGAGTAAGGAAATCAAACAGGCATgtgggagaaagagtgagaaggACGGGATTGAACCCTGGTCTCCGGTGGGGAGTTTTATATGCCACATGCCAGGGAGTATTACCACTTGACCACAGCTCTGCCATCTTACCCAGGATCTTGCTGATGTTGGAATTGTGCATGTCGGGGAAGGTCTGCAGGATCTTCCTCCTCTCGTCCTTGGCCCACACCATGAAGGCATTCATGGGTCTCTTAATGTGGGGCTCAGTACTGTTCCTTCCCCTGGTCTCCCTGAAGACCCGGGCCTCTGTAGTGCAGGAGACACCTGTGGGAAGGGAGGGCCATTTCATGACttactcaatcactcactcgttCGTGTAAAAAAACTTTTAAGCCACAGAGTACATACATTGCACAGTATGTCTAAGAGCGTGGCTTCCAGACAGTGAGGGAGGGGAcaattgaaagtgtgtgtgtgtgtgtgtgtgtgcacttgtgttTTACAGTAAGG

Function


NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU185650 True 527 lncRNA 0.48 1 57014476 57015002

Neighbor


gene id symbol gene type direction distance location
LOC118941078 NA coding downstream 42690 56968148 ~ 56971786 (-)
LOC110492408 smap coding downstream 175655 56835810 ~ 56838821 (-)
LOC110492166 LOC106561081 coding downstream 453689 56547837 ~ 56560787 (-)
LOC110492158 LOC106561083 coding downstream 472942 56527654 ~ 56541534 (-)
c2h12orf73 NA coding downstream 527816 56484556 ~ 56486660 (-)
LOC118941077 NA coding upstream 19434 57034436 ~ 57039319 (-)
zgc:113516 eki1 coding upstream 33309 57048311 ~ 57118294 (-)
LOC110492288 LOC106561064 coding upstream 137916 57152918 ~ 57235251 (-)
LOC100135818 LOC100135818 coding upstream 229757 57244381 ~ 57250155 (-)
ric3b ric3 coding upstream 287758 57302760 ~ 57310851 (-)
G162797 NA non-coding downstream 1139 57013112 ~ 57013337 (-)
G162781 NA non-coding downstream 24756 56988225 ~ 56989720 (-)
G162657 NA non-coding downstream 183900 56827296 ~ 56830576 (-)
G162662 NA non-coding downstream 197718 56816162 ~ 56816758 (-)
G162647 NA non-coding downstream 217309 56795295 ~ 56797167 (-)
G162801 NA non-coding upstream 8174 57023176 ~ 57023474 (-)
G162791 NA non-coding upstream 12283 57027285 ~ 57027775 (-)
G162792 NA non-coding upstream 12997 57027999 ~ 57028816 (-)
G162816 NA non-coding upstream 60328 57075330 ~ 57077421 (-)
G161823 NA other downstream 712381 56301355 ~ 56302095 (-)
LOC110491905 ppip5k1 other downstream 1070911 55935649 ~ 56006747 (-)
G159890 LOC106562215 other downstream 2285616 54728299 ~ 54728860 (-)
ambra1b LOC106560763 other downstream 2746123 54213602 ~ 54268394 (-)
G162745 NA other upstream 99565 57114567 ~ 57117150 (-)
G162897 NA other upstream 225277 57240279 ~ 57241372 (-)
c2h11orf16 cssa10h11orf16 other upstream 318076 57332151 ~ 57340310 (-)
LOC110492469 NA other upstream 580535 57583975 ~ 57601508 (-)

Expression



Co-expression Network