G162230


Basic Information

Item Value
gene id G162230
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 57015020 ~ 57015234 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU185034
TCCATATACCGTGGCCTTGTTATGGTCATACAGATTCTTTCAGTTGCAAAAATTAAGTGGATTGATCTACCACAGACAGCAATTGCtttcagacgaaccatcaaacaagcaaagcgtcaacacaggattaagattgaatcctactcaaatcaaatcaaagtttatttgtcacgtgcgccgaatacaacaggtgtttacagtgaaatgcttactta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU185034 True 215 lncRNA 0.38 1 57015020 57015234

Neighbor

gene id symbol gene type direction distance location
LOC110492194 LOC106561057 coding upstream 179834 56679708 ~ 56835186 (+)
LOC110492444 LOC106561059 coding upstream 360155 56649543 ~ 56654865 (+)
LOC110492175 LOC106561078 coding upstream 377384 56633497 ~ 56637636 (+)
LOC110492185 LOC106561079 coding upstream 381833 56621439 ~ 56633187 (+)
LOC118944174 NA coding upstream 382167 56632726 ~ 56632853 (+)
LOC110492362 LOC106561070 coding downstream 274258 57289492 ~ 57302882 (+)
rpl27a rpl27a coding downstream 311094 57326328 ~ 57329184 (+)
LOC118944169 NA coding downstream 312155 57327389 ~ 57327520 (+)
LOC118944168 NA coding downstream 313086 57328320 ~ 57328450 (+)
akip1 bca3 coding downstream 315162 57330396 ~ 57331987 (+)
G162058 NA non-coding upstream 344656 56668881 ~ 56670364 (+)
G162059 NA non-coding upstream 345183 56669539 ~ 56669837 (+)
G162033 NA non-coding upstream 366441 56647362 ~ 56648579 (+)
G161984 NA non-coding upstream 403811 56550698 ~ 56611209 (+)
G161987 NA non-coding upstream 417181 56547997 ~ 56597839 (+)
G162231 NA non-coding downstream 827 57016061 ~ 57016311 (+)
G162239 NA non-coding downstream 9021 57024255 ~ 57024524 (+)
LOC110492317 LOC106561060 non-coding downstream 12054 56869081 ~ 57027778 (+)
G162240 NA non-coding downstream 14852 57030086 ~ 57032664 (+)
G162241 NA non-coding downstream 17922 57033156 ~ 57033721 (+)
G161687 NA other upstream 762422 56245044 ~ 56252598 (+)
G160569 NA other upstream 1067775 55946143 ~ 55947245 (+)
G159889 LOC106562215 other upstream 2286160 54728296 ~ 54728860 (+)
G159415 NA other upstream 2661632 54352983 ~ 54353388 (+)
G158778 LOC106560766 other upstream 2993116 54021608 ~ 54021904 (+)
G162130 NA other downstream 33080 57048314 ~ 57053642 (+)
G163513 LOC106561046 other downstream 912916 57928150 ~ 57931991 (+)
G163660 LOC106561040 other downstream 1200443 58215677 ~ 58216383 (+)
G166131 lmod2 other downstream 2930474 59945708 ~ 59953165 (+)
G166878 NA other downstream 3500398 60515632 ~ 60515880 (+)

Expression


Co-expression Network