G162231


Basic Information

Item Value
gene id G162231
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 57016061 ~ 57016311 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU185035
agataccgccccaacagatccagagatgatgcaatctcaattgcactccacactgccctttcttagctggacaaaaataacacctatgtcagaatgctgttcattgactacagctcaccgttcaacaccatagtgcccacgaagctcatcactaagctaaggactctgggactaaacacctccctctgcaactggatcctggacttcctgacgggccgcccccatgtCGTAAGAGTagacaacaacacgtc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU185035 True 251 lncRNA 0.50 1 57016061 57016311

Neighbor

gene id symbol gene type direction distance location
LOC110492194 LOC106561057 coding upstream 180875 56679708 ~ 56835186 (+)
LOC110492444 LOC106561059 coding upstream 361196 56649543 ~ 56654865 (+)
LOC110492175 LOC106561078 coding upstream 378425 56633497 ~ 56637636 (+)
LOC110492185 LOC106561079 coding upstream 382874 56621439 ~ 56633187 (+)
LOC110492362 LOC106561070 coding downstream 273181 57289492 ~ 57302882 (+)
rpl27a rpl27a coding downstream 310017 57326328 ~ 57329184 (+)
LOC118944169 NA coding downstream 311078 57327389 ~ 57327520 (+)
LOC118944168 NA coding downstream 312009 57328320 ~ 57328450 (+)
akip1 bca3 coding downstream 314085 57330396 ~ 57331987 (+)
G162230 NA non-coding upstream 827 57015020 ~ 57015234 (+)
G162058 NA non-coding upstream 345697 56668881 ~ 56670364 (+)
G162059 NA non-coding upstream 346224 56669539 ~ 56669837 (+)
G162033 NA non-coding upstream 367482 56647362 ~ 56648579 (+)
G161984 NA non-coding upstream 404852 56550698 ~ 56611209 (+)
G162239 NA non-coding downstream 7944 57024255 ~ 57024524 (+)
LOC110492317 LOC106561060 non-coding downstream 10977 56869081 ~ 57027778 (+)
G162240 NA non-coding downstream 13775 57030086 ~ 57032664 (+)
G162241 NA non-coding downstream 16845 57033156 ~ 57033721 (+)
G162242 NA non-coding downstream 17696 57034007 ~ 57034367 (+)
G161687 NA other upstream 763463 56245044 ~ 56252598 (+)
G160569 NA other upstream 1068816 55946143 ~ 55947245 (+)
G159889 LOC106562215 other upstream 2287201 54728296 ~ 54728860 (+)
G159415 NA other upstream 2662673 54352983 ~ 54353388 (+)
G158778 LOC106560766 other upstream 2994157 54021608 ~ 54021904 (+)
G162130 NA other downstream 32003 57048314 ~ 57053642 (+)
G163513 LOC106561046 other downstream 911839 57928150 ~ 57931991 (+)
G163660 LOC106561040 other downstream 1199366 58215677 ~ 58216383 (+)
G166131 lmod2 other downstream 2929397 59945708 ~ 59953165 (+)
G166878 NA other downstream 3499321 60515632 ~ 60515880 (+)

Expression


Co-expression Network