G162242


Basic Information

Item Value
gene id G162242
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 57034007 ~ 57034367 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU185046
GCCCTAATGAACGTGACCGAGAGTGACATTTCCGGTCTGAATCCCCCCCCAGTTTACCTGGTGCCTCGCTTGGAAATGTGATGAGATTTCCAACACACCGCTCGAGTCCAAATCCACTATCGTCTAATGAATCAAATCCAAAAAGGAAAGGCAGACATGAGTTCTGCTCTCGTCTAACACGGGTTCATATGGCCCAATGCCAGAGAgaaacactgacacactcacaaaCTGATGCTAATTAGAAAGCCTTTGATTTGACCTTTATTATTTTATGGTTACAGAGGAACTGTGACATAATCACATGCTCTGCTCTTGGGTGATCTTATGAAAGACTCTCCTTAAGATGGACCCTCAAGGCGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU185046 True 361 lncRNA 0.37 1 57034007 57034367

Neighbor

gene id symbol gene type direction distance location
LOC110492317 LOC106561060 coding upstream 6229 56869081 ~ 57027778 (+)
LOC110492194 LOC106561057 coding upstream 198821 56679708 ~ 56835186 (+)
LOC110492444 LOC106561059 coding upstream 379142 56649543 ~ 56654865 (+)
LOC110492175 LOC106561078 coding upstream 396371 56633497 ~ 56637636 (+)
LOC118944174 NA coding upstream 401154 56632726 ~ 56632853 (+)
LOC110492362 LOC106561070 coding downstream 255125 57289492 ~ 57302882 (+)
rpl27a rpl27a coding downstream 291961 57326328 ~ 57329184 (+)
LOC118944169 NA coding downstream 293022 57327389 ~ 57327520 (+)
LOC118944168 NA coding downstream 293953 57328320 ~ 57328450 (+)
akip1 bca3 coding downstream 296029 57330396 ~ 57331987 (+)
G162241 NA non-coding upstream 286 57033156 ~ 57033721 (+)
G162240 NA non-coding upstream 1343 57030086 ~ 57032664 (+)
G162239 NA non-coding upstream 9483 57024255 ~ 57024524 (+)
G162231 NA non-coding upstream 17696 57016061 ~ 57016311 (+)
G162243 NA non-coding downstream 267 57034634 ~ 57035657 (+)
G162244 NA non-coding downstream 1313 57035680 ~ 57036444 (+)
G162246 NA non-coding downstream 5243 57039610 ~ 57040022 (+)
G162247 NA non-coding downstream 5923 57040290 ~ 57041826 (+)
G162248 NA non-coding downstream 7777 57042144 ~ 57042404 (+)
G161687 NA other upstream 781409 56245044 ~ 56252598 (+)
G160569 NA other upstream 1086762 55946143 ~ 55947245 (+)
G159889 LOC106562215 other upstream 2305147 54728296 ~ 54728860 (+)
G159415 NA other upstream 2680619 54352983 ~ 54353388 (+)
G158778 LOC106560766 other upstream 3012103 54021608 ~ 54021904 (+)
G162130 NA other downstream 13947 57048314 ~ 57053642 (+)
G163513 LOC106561046 other downstream 893783 57928150 ~ 57931991 (+)
G163660 LOC106561040 other downstream 1181310 58215677 ~ 58216383 (+)
G166131 lmod2 other downstream 2911341 59945708 ~ 59953165 (+)
G166878 NA other downstream 3481265 60515632 ~ 60515880 (+)

Expression


Co-expression Network