G162246


Basic Information

Item Value
gene id G162246
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 57039610 ~ 57040022 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU185050
caaattctataaaacgacgttggagacgGCAATGGTATAGAAATTAtttctttggcaacagctctggtggacattcctgcagtcagcatgccaattgcacgcttactcaaaactttagacatctgtggcattgtgttgtgtgacaaaactgcacattttagagtggccttttgttgaagctgttcaatcagcttcttgatatgccatacctgtcaggtgaatggattatcttggcaaaggagaaatgttcactaacagggatgtaaacaaatatgtgcacAAAACTTTTGTGCGTACGGAAAATTTTgcagatcttttatttcagctcataaaacatgggaccaacctttacatgttgcatttgtatttttgttcagtttgaaaggacacacacaggtgtctttGATCATGGC

Function

NR:

description
hypothetical protein EH28_06569

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU185050 True 413 lncRNA 0.39 1 57039610 57040022

Neighbor

gene id symbol gene type direction distance location
LOC110492317 LOC106561060 coding upstream 11832 56869081 ~ 57027778 (+)
LOC110492194 LOC106561057 coding upstream 204424 56679708 ~ 56835186 (+)
LOC110492444 LOC106561059 coding upstream 384745 56649543 ~ 56654865 (+)
LOC110492175 LOC106561078 coding upstream 401974 56633497 ~ 56637636 (+)
LOC118944174 NA coding upstream 406757 56632726 ~ 56632853 (+)
LOC110492362 LOC106561070 coding downstream 249470 57289492 ~ 57302882 (+)
rpl27a rpl27a coding downstream 286306 57326328 ~ 57329184 (+)
LOC118944169 NA coding downstream 287367 57327389 ~ 57327520 (+)
LOC118944168 NA coding downstream 288298 57328320 ~ 57328450 (+)
akip1 bca3 coding downstream 290374 57330396 ~ 57331987 (+)
G162244 NA non-coding upstream 3166 57035680 ~ 57036444 (+)
G162243 NA non-coding upstream 3953 57034634 ~ 57035657 (+)
G162242 NA non-coding upstream 5243 57034007 ~ 57034367 (+)
G162241 NA non-coding upstream 5889 57033156 ~ 57033721 (+)
G162240 NA non-coding upstream 6946 57030086 ~ 57032664 (+)
G162247 NA non-coding downstream 268 57040290 ~ 57041826 (+)
G162248 NA non-coding downstream 2122 57042144 ~ 57042404 (+)
G162249 NA non-coding downstream 2455 57042477 ~ 57042963 (+)
G162250 NA non-coding downstream 3073 57043095 ~ 57043455 (+)
G162251 NA non-coding downstream 3566 57043588 ~ 57043809 (+)
G161687 NA other upstream 787012 56245044 ~ 56252598 (+)
G160569 NA other upstream 1092365 55946143 ~ 55947245 (+)
G159889 LOC106562215 other upstream 2310750 54728296 ~ 54728860 (+)
G159415 NA other upstream 2686222 54352983 ~ 54353388 (+)
G158778 LOC106560766 other upstream 3017706 54021608 ~ 54021904 (+)
G162130 NA other downstream 8292 57048314 ~ 57053642 (+)
G163513 LOC106561046 other downstream 888128 57928150 ~ 57931991 (+)
G163660 LOC106561040 other downstream 1175655 58215677 ~ 58216383 (+)
G166131 lmod2 other downstream 2905686 59945708 ~ 59953165 (+)
G166878 NA other downstream 3475610 60515632 ~ 60515880 (+)

Expression


Co-expression Network