Gene
RNA
| Item | Value |
|---|---|
| gene id | G163104 |
| gene name | rpl27a |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 57327820 ~ 57329185 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| rpl27a | Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of large ribosomal subunit. Orthologous to human RPL27A (ribosomal protein L27a). |
| description |
|---|
| PREDICTED: 60S ribosomal protein L27a-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU185978 | True | 389 | lncRNA | 0.54 | 2 | 57327820 | 57329185 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| ric3b | ric3 | coding | downstream | 16969 | 57302760 ~ 57310851 (-) |
| LOC100135818 | LOC100135818 | coding | downstream | 77665 | 57244381 ~ 57250155 (-) |
| LOC110492288 | LOC106561064 | coding | downstream | 92569 | 57152918 ~ 57235251 (-) |
| zgc:113516 | eki1 | coding | downstream | 209526 | 57048311 ~ 57118294 (-) |
| LOC118941077 | NA | coding | downstream | 291039 | 57034436 ~ 57039319 (-) |
| c2h11orf16 | cssa10h11orf16 | coding | upstream | 2966 | 57332151 ~ 57340310 (-) |
| LOC110492469 | NA | coding | upstream | 266765 | 57583975 ~ 57601508 (-) |
| LOC110492538 | LOC106561048 | coding | upstream | 468594 | 57797779 ~ 57886941 (-) |
| dusp8a | LOC106561046 | coding | upstream | 598938 | 57928123 ~ 57994689 (-) |
| LOC110492572 | ptpn5 | coding | upstream | 669120 | 57998305 ~ 58025998 (-) |
| G163147 | NA | non-coding | downstream | 12663 | 57314815 ~ 57315157 (-) |
| G163131 | NA | non-coding | downstream | 43782 | 57283827 ~ 57284038 (-) |
| G163130 | NA | non-coding | downstream | 44078 | 57283460 ~ 57283742 (-) |
| G163127 | NA | non-coding | downstream | 49425 | 57278160 ~ 57278395 (-) |
| G163115 | NA | non-coding | downstream | 66937 | 57260673 ~ 57260883 (-) |
| G163163 | NA | non-coding | upstream | 117129 | 57446314 ~ 57449277 (-) |
| G163232 | NA | non-coding | upstream | 127408 | 57456593 ~ 57457164 (-) |
| G163277 | NA | non-coding | upstream | 203096 | 57532281 ~ 57532697 (-) |
| G163284 | NA | non-coding | upstream | 216684 | 57545869 ~ 57546149 (-) |
| G163286 | NA | non-coding | upstream | 220014 | 57549199 ~ 57549419 (-) |
| G162897 | NA | other | downstream | 86448 | 57240279 ~ 57241372 (-) |
| G162745 | NA | other | downstream | 210670 | 57114567 ~ 57117150 (-) |
| G162657 | NA | other | downstream | 497244 | 56827296 ~ 56830576 (-) |
| G161823 | NA | other | downstream | 1025725 | 56301355 ~ 56302095 (-) |
| G163839 | LOC106561050 | other | upstream | 447284 | 57776469 ~ 57789383 (-) |
| G164003 | NA | other | upstream | 782156 | 58111341 ~ 58118221 (-) |
| LOC110492612 | LOC106561041 | other | upstream | 800224 | 58118987 ~ 58200644 (-) |
