G163251 (LOC106561074)


Basic Information

Item Value
gene id G163251
gene name LOC106561074
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 57554439 ~ 57555634 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU186163
taTCTCAAGCTGATCTGAATGTTTGCGGCCATTCTCATTATGTCACAATGTAAGAAATCAACATTAGCAGCATATTTCTGGGACAACTGCTCTTCTGAATGGCAATTTAGGAGAATTCAGTGTGGAAAATGACACTTTCATTTCCCTGCTGTAAAACAGTATAACAGCAGATATCTGTATCGGTAAGTTTTGTCCCCCCAAAAATCGGACCCAAATAACCTTATCGGTCAGGCTCTAGTTTTAATAGGGTAAATAACAGGAGGTGTGTCACTAAAACAATTGTACTATTGCAATTAGCTGGATTCCAATAGGCTTACCCATGACCAACAAAGCTCACTACCTCTTTAAATGAGTGCATATTTCCAAGCTCAACCATTATTAAAGAGAGCCACTCCTGTGCACACAAACAAATGACTAGCTGGGTGCAGTCCTCCTGTGGTTAGTAATGAAGGATTCAGTTCTTCACAACCACAACACACATTCAAGTATCTTCTTCATTGTTAGTGGCGAGTGATGGACAAGCGTGTCTAACGAAAGGGATCTTTGGACACAATCTTGGCGTTTACAAGTGAACAGCAGTCAGTGTGCTGGTTTAAATCCTGACCATCAAATCAGCTACTGATTCAAACCCGACAAACCAGATAACTGGCCAAAACTCAAAGCCAAATCAATCACATTGACCTCCTGCTGCTTCTATCTAATCTATGGGTACTGAGTAGAACTCTAAGCCTGGGTTATGAAGGCACTACTCTGCAGGTACTGAGTAGAGCTCTAGGCCTGGGTTATGAAGGCTCTACTCTGCAGGTACTGAGTCCGGGCCCTCGTCCCTCAGCATGTCCGTTTCAGGGCTAGGCAGGCCTTGGTCAGAGGTGGGCGTGTCGGCCTGCTCCTGGGAGAGGCCTTCGGAACACCGGCTTACATTCGGGGAAATTACGTCGGGGCTCGTGTCACATGACTCGGTGCTCTGCCCCGACATGGTGGCGGTGATCATCGTGGCGACACTGGGCGGGATGGGATCAAACTCGTCGTCCTCCAGGACCGGCGACTCGTGGGCGTCTGTGAGGGAGAGACTCAGGGTGA

Function

NR:

description
PREDICTED: kxDL motif-containing protein 1-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU186163 True 1080 lncRNA 0.47 3 57554439 57555634

Neighbor

gene id symbol gene type direction distance location
c2h11orf16 cssa10h11orf16 coding downstream 214129 57332151 ~ 57340310 (-)
ric3b ric3 coding downstream 243588 57302760 ~ 57310851 (-)
LOC100135818 LOC100135818 coding downstream 304284 57244381 ~ 57250155 (-)
LOC110492288 LOC106561064 coding downstream 319188 57152918 ~ 57235251 (-)
zgc:113516 eki1 coding downstream 436145 57048311 ~ 57118294 (-)
LOC110492469 NA coding upstream 40316 57583975 ~ 57601508 (-)
LOC110492538 LOC106561048 coding upstream 242145 57797779 ~ 57886941 (-)
dusp8a LOC106561046 coding upstream 372489 57928123 ~ 57994689 (-)
LOC110492572 ptpn5 coding upstream 442671 57998305 ~ 58025998 (-)
LOC110492612 LOC106561041 coding upstream 563353 58118987 ~ 58200644 (-)
G163286 NA non-coding downstream 5020 57549199 ~ 57549419 (-)
G163284 NA non-coding downstream 8290 57545869 ~ 57546149 (-)
G163277 NA non-coding downstream 21742 57532281 ~ 57532697 (-)
G163232 NA non-coding downstream 97275 57456593 ~ 57457164 (-)
G163163 NA non-coding downstream 105162 57446314 ~ 57449277 (-)
G163248 NA non-coding upstream 4274 57559908 ~ 57626915 (-)
G163307 LOC106561056 non-coding upstream 24891 57580525 ~ 57581786 (-)
G163325 LOC106561052 non-coding upstream 63730 57619364 ~ 57623508 (-)
G163329 NA non-coding upstream 73612 57629246 ~ 57629813 (-)
G162897 NA other downstream 313067 57240279 ~ 57241372 (-)
G162745 NA other downstream 437289 57114567 ~ 57117150 (-)
G162657 NA other downstream 723863 56827296 ~ 56830576 (-)
G163839 LOC106561050 other upstream 220835 57776469 ~ 57789383 (-)
G164003 NA other upstream 555707 58111341 ~ 58118221 (-)
G164037 NA other upstream 618025 58173659 ~ 58175088 (-)

Expression


Co-expression Network