G163248


Basic Information

Item Value
gene id G163248
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 57559908 ~ 57626915 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU186159
ATAAGAGAAGGGagtagtgcATAGTATACATACATTACTATATGGTAAGGCAGAGTTATGGCTAGTTATGGTTAGAAAAGTACAAAGTGACCAGTATACTACCCTACTTACATCGCAAAGTCTAAACACATGGTCTTATGGTTGGCATTGAATAGGTTGAACAGCAGCTGAACTTATTGTTCGCTGTACACACAGGGAGTATGATTGATGACAATCAACAGGGCTTTTTCAAAGTTTCCAAAAAGTACACAAATAACCGTGCCACTTTACAATGTGTTCCTGATACTTTTCTATTTGCACAGTAGTTCCATAGGGAAGTACTGTAATCTAGGTTCATATTTTCCACCGTACATATTAAGTTAGTTACTACTCATAAATGGTGTCAGTATCCTCACAGATGAACCAACCCCAAACCCAGGGTAGAGGGGCCGAGTGAACGTGGTCTTGACTCCGTGGAGGAGGGTCATGGTGTCTGAGACAGTCACGCTGTAAAAGGACAGAGTTCCTGCCCTGTGGTCCAGGTACACTCCGACTCTGGAGTCTGAGCAGATGACGGGGATAGAAGTCGCTCTACCATTATGGTAGAAACAGCATCTAGATGCAGAGCAGTACAACCTCCAGGACTGGTCATTAGCACCAAACCAACACTCTCGACCACTTCCTCTCCTGCTGATCCCTTTATATGAGACGGCTACATCAACCTCCACCCCGGtccactctacctcccagtaGCAGGGTTCAGACACACTCCAGACACCCTCTTTACACAACACCTGTTTCCAGTGGCTAAATCTATGTTCATGGTTGGGATAGGCCTGGATCTTATGACTCCTGGTCACCTTTCTGTTCCCCTCAGACAGACACAGGAGTTGATTTGCTGTGTTGGGATCCAATGTCAGCGGGCAG

Function

NR:

description
tripartite motif-containing protein 16-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU186159 True 906 lncRNA 0.37 2 57559908 57626915

Neighbor

gene id symbol gene type direction distance location
c2h11orf16 cssa10h11orf16 coding downstream 219598 57332151 ~ 57340310 (-)
ric3b ric3 coding downstream 249057 57302760 ~ 57310851 (-)
LOC100135818 LOC100135818 coding downstream 309753 57244381 ~ 57250155 (-)
LOC110492288 LOC106561064 coding downstream 324657 57152918 ~ 57235251 (-)
zgc:113516 eki1 coding downstream 441614 57048311 ~ 57118294 (-)
LOC110492538 LOC106561048 coding upstream 170864 57797779 ~ 57886941 (-)
dusp8a LOC106561046 coding upstream 301208 57928123 ~ 57994689 (-)
LOC110492572 ptpn5 coding upstream 371390 57998305 ~ 58025998 (-)
LOC110492612 LOC106561041 coding upstream 492072 58118987 ~ 58200644 (-)
LOC110492624 NA coding upstream 559368 58186283 ~ 58194922 (-)
G163251 LOC106561074 non-coding downstream 4274 57554439 ~ 57555634 (-)
G163286 NA non-coding downstream 10489 57549199 ~ 57549419 (-)
G163284 NA non-coding downstream 13759 57545869 ~ 57546149 (-)
G163277 NA non-coding downstream 27211 57532281 ~ 57532697 (-)
G163232 NA non-coding downstream 102744 57456593 ~ 57457164 (-)
G163329 NA non-coding upstream 2331 57629246 ~ 57629813 (-)
G163343 NA non-coding upstream 26594 57653509 ~ 57654382 (-)
G163358 NA non-coding upstream 38797 57665712 ~ 57665952 (-)
G163782 NA non-coding upstream 44176 57671091 ~ 57672882 (-)
G163807 NA non-coding upstream 89135 57716050 ~ 57716313 (-)
G162897 NA other downstream 318536 57240279 ~ 57241372 (-)
G162745 NA other downstream 442758 57114567 ~ 57117150 (-)
G162657 NA other downstream 729332 56827296 ~ 56830576 (-)
G163839 LOC106561050 other upstream 149554 57776469 ~ 57789383 (-)
G164003 NA other upstream 484426 58111341 ~ 58118221 (-)
G164037 NA other upstream 546744 58173659 ~ 58175088 (-)
LOC110492691 LOC106561037 other upstream 735671 58355406 ~ 58389301 (-)

Expression


Co-expression Network