G163325 (LOC106561052)


Basic Information

Item Value
gene id G163325
gene name LOC106561052
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 57619364 ~ 57623508 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU186251
TACCTCCTGCGCCAGTCTACTGATCATTACTCCTACCTCCCGCGCCAGTCTACTGATCATTACTCCTACCTCCCGCGCCAGTCTACTGATCATTACTCCTACCTCCCGCGCCAGTCTACTGATCATTACTCCTACCTCCCGCGCCAGTCTACTGATCATTACTCCTACCTCCCGTGCCAGTCTACTGATCATTACTCCTACATCCTGCGCCAGTCTACCGATCATTACTCCTACCTCCTGCGCCAGTCTACTGATCATTACTCCTACATCCTGCGCCAGTCTACCGATCACAATTCCTACCTCCTGCACCAGTCTACTGATCTTCAGCTGCTTCTCTCGTTCATacatctcctccttctctgcaGCCAGCTTGAGCTCAAACTCCATCTCCTTCTTGTTTTTCCTCTGTTCCTGCAGGGTGTCTGTGTTGGacaccttcttcttcttcctcttcttctctcctttctgaGATATCATTCATATTCATCATTACAGAAACCAGGGAGAAACCAGAACCCATTCCACCCCAAACCGTCCAAACCTTACAAGGACCAAGACTAGAACCTGCACAGTAAGGTTCAACAATAATATATTATAGAACCGCCACGGCACTGTGGTGACAGAACCAGTAAACGAGTGATGTTATTTTTGCTCAAAGTTAAATATGTCCGTTAGCTTTGACAGAACACATCTCACAGCACACCAAACCGCGACCGTACAGAATACCTTGCGGAGCGTGGGCAGCTTCCCTTCGTAGCGATAAAACCATCCGAAagctatagagagagaaaaaacaatgCCAAACAGAGTCACTCGGATGCCGAGGCAGgaattagcctggtcccagatttgtttGTGCTTTCGCCTACTCCactgtcattgtcaagccaaatcTGCATTGCATGACAATTCCACATAGAGAGCAGGAACATACTGACACTCAGGCTAAGGAGGACTCAGAGCAGAACTTTCAGCAACTATGGAGAAAAAGCATGCGACAGTTCGGCAACTGAATCCACCTGCACGCGACAGAAATGAAAGGAGAAAGACAGCTCAAGGGGTTGTATTGAGAAAGATGGCACCGTGTTAAGAGGAACGCTAGGCAGTTTCTGAAATACATGAACAGCTAGCTAAAGCAGAAACAGCCTAGCATCCAGGCTATCCCTACTAAGGTGTGGGAGCCTGTCAGTGGGTTTTGATTGTCAAAGGAAATCGAGCGTGTAGCGCGTGGTATTGTAGTGCGTCTCTGACGCTGCGATCTGTGGGTACACTGTGAGACCCGTCACTCACTTCActcccctcttccttctcctcctcctcctgctgctcttcATCGTCGTCGTCAGCCTGAAAAGAGCTTGCTCCAATGTCAGAGTTCTTGGACTTGGGGGGTGCGGTGTTGATTTCAGGCGGGGCCGGGGAGGGACTCTTGGTTTTGGGTTGCTCTCTAGGCGCCCAGTCCTCCTCCCACTCCCTGTGGTGCTTCCTCTCCGCAGCCTCGATCTTCTCCATCTCCTTCCGATAGCGTTCCTCTTCCTCGGCAGTCTTCTGAGAAATCTCCATCTTTCTCtgcctctctttctcctgctgctccttgaCCATCTTGTTAGTCTCCAGGGCAACCCTTTTCTGGTGCATCAACTCTCGTCTGTCCAGCTCCCTGCGAGCCTCCACCGCCAGACGCTCCTCGTCTGTCATAAACAACTcactgc

Function

NR:

description
PREDICTED: harmonin-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU186251 True 1712 lncRNA 0.46 4 57619364 57623508

Neighbor

gene id symbol gene type direction distance location
LOC110492469 NA coding downstream 17856 57583975 ~ 57601508 (-)
c2h11orf16 cssa10h11orf16 coding downstream 279054 57332151 ~ 57340310 (-)
ric3b ric3 coding downstream 308513 57302760 ~ 57310851 (-)
LOC100135818 LOC100135818 coding downstream 369209 57244381 ~ 57250155 (-)
LOC110492288 LOC106561064 coding downstream 384113 57152918 ~ 57235251 (-)
LOC110492538 LOC106561048 coding upstream 174271 57797779 ~ 57886941 (-)
dusp8a LOC106561046 coding upstream 304615 57928123 ~ 57994689 (-)
LOC110492572 ptpn5 coding upstream 374797 57998305 ~ 58025998 (-)
LOC110492612 LOC106561041 coding upstream 495479 58118987 ~ 58200644 (-)
LOC110492624 NA coding upstream 562775 58186283 ~ 58194922 (-)
G163307 LOC106561056 non-coding downstream 37578 57580525 ~ 57581786 (-)
G163251 LOC106561074 non-coding downstream 63730 57554439 ~ 57555634 (-)
G163286 NA non-coding downstream 69945 57549199 ~ 57549419 (-)
G163284 NA non-coding downstream 73215 57545869 ~ 57546149 (-)
G163329 NA non-coding upstream 5738 57629246 ~ 57629813 (-)
G163343 NA non-coding upstream 30001 57653509 ~ 57654382 (-)
G163358 NA non-coding upstream 42204 57665712 ~ 57665952 (-)
G163782 NA non-coding upstream 47583 57671091 ~ 57672882 (-)
G163807 NA non-coding upstream 92542 57716050 ~ 57716313 (-)
G162897 NA other downstream 377992 57240279 ~ 57241372 (-)
G162745 NA other downstream 502214 57114567 ~ 57117150 (-)
G163839 LOC106561050 other upstream 152961 57776469 ~ 57789383 (-)
G164003 NA other upstream 487833 58111341 ~ 58118221 (-)
G164037 NA other upstream 550151 58173659 ~ 58175088 (-)
LOC110492691 LOC106561037 other upstream 739078 58355406 ~ 58389301 (-)

Expression


Co-expression Network