G163839 (LOC106561050)


Basic Information

Item Value
gene id G163839
gene name LOC106561050
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 57776469 ~ 57789383 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU186917
ttttttattaacaaatAATTCATATTTAATGTTACGAATATCATACATAATTAGAAAATAAAATTATAATATATAGCCCATGGTACAATTGCACTTTGGAAtgtcctcccctctttctcctcggTCACTTGTCCGCCTTGACGAAGGAGGCGAAGACACTGTCCTCTTTCTCCAGCAGCGCCTGGGGTCTGTCGTATTCTAGAATGAGCCCTCGCTTCATCACGATCACCAGGTCTGCTTTCAGGATGGTGTGGACACGATgTGCTATAGTAACCACTGTTCTATCAGCGAAGGCAGTCATCACCACCTTCTGTAAGATGCTTTCcGTGGCCATGTCTATAGAGGCTGTGGCTTCGTCCATGATGAGGATGCTAGACTTCCTGACGAAGGCTCTGGCCAGACAGAAGAGCTGTCTCTGGCCCTGGCTGAagttctcccctccctctgtcactgTGGCGTCCAGTCCTCCTGGTAGGGTCTTGACTACAGGTTTTAGCTGAGCGATGTCCAGAGCCTCCCACAGCATGTCATCAGTAGCCTTCATCTCTGGGTCCAGGTTAAACCGGATGGTTCCGCTGAATAAGATGGGGTCCTGGAGGATGATGGAGAATCGAGACCTCAGGGTCTGCAGAGGCAGCTTGGCGATGTCAATGTCATCTATGATGATACGCCCCTCGAACATGTCGACCATGCGAAAGAAGGCCAGGGAGAAGGAAGACTTCCCACTTCCTGTCCTGCCACAGATCCCCACCTTCTGCCCAGGGCTGATGTGTGCGTTGACTTGTTTGAGGACAGGTTTCAGGGTGGTGTCGTAACGCACACTCAGGTTCTCAATCTGAATCTCCCCCTGCTGTGGCCAGCCATCCGGCACCTGAGATgcagTGAGCAGTCCTTCATAGTTCTCAGGCTCAGTCTGCAGCAGACCATTGATTCTCTTGACTGAACCCAGCTGAACCTCCATGTCTGCCAGGTTACGAACCATCCAGTTCAGGTAGTTGGACACCATGAGTGCATAGGTGAGACCTAGTCCTACCAGGCCAGTGGAGAGGTGGTTATACAGAGAGTTAGAGATGGAGGCCACAGCTGCTATCAGAACCACACAGGCACCTATGTACTCCATGCGGACCTCTAGCCAGCGATTGGCTGCTGTGAGAAAGAGGGAGGCGATGTTGTTGGCATCAGTGAACTCCAGTAACCTCTGTCTGAACTTGGGCTCATACCTGGGAGGAGAGAACCATTGAG

Function

NR:

description
LOW QUALITY PROTEIN: ATP-binding cassette sub-family C member 8-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU186917 True 1242 TUCP 0.51 10 57776469 57789383

Neighbor

gene id symbol gene type direction distance location
LOC110492469 NA coding downstream 174961 57583975 ~ 57601508 (-)
c2h11orf16 cssa10h11orf16 coding downstream 436159 57332151 ~ 57340310 (-)
ric3b ric3 coding downstream 465618 57302760 ~ 57310851 (-)
LOC100135818 LOC100135818 coding downstream 526314 57244381 ~ 57250155 (-)
LOC110492288 LOC106561064 coding downstream 541218 57152918 ~ 57235251 (-)
LOC110492538 LOC106561048 coding upstream 8396 57797779 ~ 57886941 (-)
dusp8a LOC106561046 coding upstream 138740 57928123 ~ 57994689 (-)
LOC110492572 ptpn5 coding upstream 208922 57998305 ~ 58025998 (-)
LOC110492612 LOC106561041 coding upstream 329604 58118987 ~ 58200644 (-)
LOC110492624 NA coding upstream 396900 58186283 ~ 58194922 (-)
G163837 LOC106561050 non-coding downstream 11346 57761150 ~ 57765123 (-)
G163825 LOC106561050 non-coding downstream 16140 57738768 ~ 57760329 (-)
G163807 NA non-coding downstream 60156 57716050 ~ 57716313 (-)
G163782 NA non-coding downstream 103587 57671091 ~ 57672882 (-)
G163358 NA non-coding downstream 110517 57665712 ~ 57665952 (-)
G163819 NA non-coding upstream 5232 57794615 ~ 57794979 (-)
G163944 NA non-coding upstream 231711 58021094 ~ 58021476 (-)
G164080 NA non-coding upstream 468637 58258020 ~ 58259366 (-)
LOC110492691 LOC106561037 non-coding upstream 566023 58355406 ~ 58389301 (-)
G164195 NA non-coding upstream 643422 58432805 ~ 58433005 (-)
G162897 NA other downstream 535097 57240279 ~ 57241372 (-)
G162745 NA other downstream 659319 57114567 ~ 57117150 (-)
G164003 NA other upstream 321958 58111341 ~ 58118221 (-)
G164037 NA other upstream 384276 58173659 ~ 58175088 (-)
G165742 NA other upstream 1692574 59481957 ~ 59482314 (-)

Expression


Co-expression Network