G163362


Basic Information

Item Value
gene id G163362
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 57789707 ~ 57792414 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU186330
acgcTCCTACAGTCAATAGTAACTGAGAAGCTTGTGAATCATGGAGTCATTCACCACTACCATAAACCGGCCTTGCACTCTCTGACATGTGAGCCCTGATTGGATGCTCGGGGGCCAGACACCCTTTTGACTCCACGTTCAATAGCCAACCATTGtcgaacgttgcagatagaaatgaaACGAATAGAGCCGACGTGATTCCTTATTCTACAGGTCAGAGATGCATGTTTGTTCTATATAGCAtctttctatctgaacgttccaaaacgTTGCCTAGTGATGAACACATCCCAGGTCACACACATTTCAGTCTCCTCCAAGCAATTGGTAATGTTTATGGGCGTGCCAAGGTTAATATAATGAACATGTATGGAGTCCCCTGGTTTGTTATGGAGACCCCAGCACCCATGGCCTTCCTGAAAATGTGAACCCAGGTCAGCATGGGTTTAGTGTGCAGTGAATGCGAGATTAACGTGTCAGAAACAAAAAATGTAGGACATGAATCATAGCCTTGTAAACAGCATGAGAGGGACTGAGATGATGTATGTTTAGGCCTACTATCCGAGATAAAGAAAATAGTTTAGTGTGTTGCCTAATTATGTTCTTATCAATGTATTGTCATTAGTGTTTGGGAAGATTGTCTATCATTGGGAATGGATGAATAACCTTCTAGGGTGAATTTGGAATGCATTTCCGTCTTCTGTAACCTCTTCAGACATCCATCCAGCTTGTTAATCCAACACATGGTCTCTGAAATTCTCAAGGTGTTTCCTAATCCCACAAAAAGTGTTTTATCTTCACAGGAGGCATGACACGCCCGTTTGTGACCACTGAGTCAACCATATTTTCAGTTTGCATTTGGAAGACTGGGACAGCAGGTTCGATAAACTGGGACACCATTATTGTAGTCCTAATTGTTCCCGAATGACAATTCAATTTTGTGTGATCATCTGGGAATTTCAGAAAGATATCATGTGTTGGACTAATATGTTGGATAGATATGTCTGAAGAGGTTACAGAAGACAGAAATCCAAACAGTATCCCACTTTTTCTGAATTCACTCAGAAATTGTACAATAAAAAATTAGCaagatatgcagtaccagtcaaaagtttggacacacagtcattccagggtttttctttatttttttgtattttctacattgtagaataatagtgaagacatcacaactatggaATCGTGTattaaccagaaaagtgttaaacaaatcaaaatatattttatatttgagattgttcaaagtagccaccctttgccttgatgacatatttgcacacttttggcattctctcaaccagcttcatgaggtagtcacctggaatgcatttcaattaacaggagttccttgttaaaagttaatttgggaATTTccttccttaatgcatttgagccaatcagttgtgttgtgacaaggtagggttggtatgcagaagatagccctatttggtaaaagaccaagtccatattatggcaagaacaagtaaaataagcaaagagaaattaccagtccatcattacttttagacatgaaggtcagtcaatggggaacatttcaagaacttagaaagtttcttcatgtgcagtcgcaaaaaccaccaagcgctatgatgaaactggctctcatgaggaccgccacaggaaaggaagacccagagttacctctgctgcagaggataagttcattagtgttaccagcctcagaaattgcggcccaaataaatgcttcacagagttcaagtaacagacacatctcaacatcaactgttcagaggagactgcgtgaatcaggccttcgtggtcgaattgttgcaaagaaaccactatgaaaggacactaataataagaagagacttgcttgggccaagaaacacgagcaatggacattagaccggtggaaatctgttctttggtctgatgagtccaaatttgcgatttttggttccaactgccgtgtctttgtgagacgcagagtaggtgaacgaatgatctccgtatgtgttgttcccaccgtgaagcatggcggAGAAGGTGTGATGTTGtcgggttgctttgctggtgacactgtcagtgatttatttagactgccaacagcatggctgccacagcattctgcagcgatacgccatcccatctggtttgcgctgagTGGAACAATcaattgtttttcaaaaggacaatgacccaacacacctccaggctgtgtaagaactatttgaccaagaaggagagtgatggagtgctgcatcagatgacctggcctccacaatcacccgacctcaacccaattgagatggtttgggatgagttggactgaaagagtggaggaaaagcagccaacaagtgctcagcatatgttggaacaccttcaagactgttggaaaagtattccaggtgaagctggttgagagaatgccaagtgtgcaaatcagttatcaaggcaaagggtggctacttatacaatatattttgatctgtttaacattgatgtcttcattattattctacaatgtagaaaatagtgaaaataaacaaaatcccttgaatgagtaggtgtccaaacttttgactggtactgtgtgtatatatacatatacactgaacttaaatataaacgtaacatatgaagtgttggtcccatgtttcatgagctgaaataaaagatcccagaaatgttccatatgcac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU186330 True 2708 lncRNA 0.47 1 57789707 57792414

Neighbor

gene id symbol gene type direction distance location
LOC110492500 LOC106561050 coding upstream 312 57667227 ~ 57789395 (+)
ush1c LOC106561052 coding upstream 134111 57606860 ~ 57655596 (+)
LOC110492461 LOC106561056 coding upstream 206183 57580154 ~ 57583524 (+)
LOC110492452 ccdc34 coding upstream 209877 57574248 ~ 57579830 (+)
LOC110492308 LOC106561065 coding upstream 228868 57556805 ~ 57560839 (+)
LOC110492531 LOC106561047 coding downstream 2849 57795263 ~ 57797634 (+)
LOC110492579 LOC106561044 coding downstream 247924 58040338 ~ 58109443 (+)
LOC110492604 LOC106561042 coding downstream 317709 58110123 ~ 58111180 (+)
LOC110492647 LOC106561039 coding downstream 461190 58253604 ~ 58296746 (+)
LOC110492681 LOC106561133 coding downstream 523863 58316277 ~ 58322551 (+)
G163352 NA non-coding upstream 125266 57661952 ~ 57664441 (+)
LOC110492340 LOC106561069 non-coding upstream 252486 57536947 ~ 57546176 (+)
G163049 NA non-coding upstream 255464 57533948 ~ 57534243 (+)
G163048 NA non-coding upstream 257539 57531949 ~ 57532168 (+)
G163047 NA non-coding upstream 258532 57530950 ~ 57531175 (+)
G163438 NA non-coding downstream 2135 57794549 ~ 57794862 (+)
G163464 NA non-coding downstream 52709 57845123 ~ 57845437 (+)
G163473 LOC106613263 non-coding downstream 62870 57855284 ~ 58335346 (+)
G163499 NA non-coding downstream 111423 57903837 ~ 57973779 (+)
G163544 NA non-coding downstream 202890 57995304 ~ 57999495 (+)
G162130 NA other upstream 736065 57048314 ~ 57053642 (+)
G161687 NA other upstream 1537109 56245044 ~ 56252598 (+)
G160569 NA other upstream 1842462 55946143 ~ 55947245 (+)
G159889 LOC106562215 other upstream 3060847 54728296 ~ 54728860 (+)
G159415 NA other upstream 3436319 54352983 ~ 54353388 (+)
G163513 LOC106561046 other downstream 135736 57928150 ~ 57931991 (+)
G163660 LOC106561040 other downstream 423263 58215677 ~ 58216383 (+)
G166131 lmod2 other downstream 2153294 59945708 ~ 59953165 (+)
G166878 NA other downstream 2723218 60515632 ~ 60515880 (+)
LOC110493059 LOC100194658 other downstream 3059018 60851417 ~ 60866455 (+)

Expression


Co-expression Network