G163660 (LOC106561040)


Basic Information

Item Value
gene id G163660
gene name LOC106561040
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 58215677 ~ 58216383 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU186698
GAGGCCTCTTTGGCTACGTCCGTGCCTGCAATGCCCATGGCAAATCCAACATCCGCTTTCTTCAAGGCAGGGCCGTCATTAGTGCCATCTCCTGTTACAGCAACAACTTGTCTTGGTTCTAGTACAGTGCTATCCATTATACCTTTTACTAAAGTATGTTTGTCAGTGGGTGAGGATCTTGCAAGCACACGGAGTTTAGGCCAAATCTTATCAATGCGTTCTTGCTCAATCTCTCCCAGTTGGTTTCTTATCCGTCGGTTGAACTCTTTGCCGTCTATACAGAGGAAGTCATCTCCGGGGTGCACTATGCCACACTTACTGGCAATGGCGCGAGCCGTGTCGATGTTGTCCCCTGTGACCATGCGCACCGTG

Function

NR:

description
plasma membrane calcium-transporting ATPase 1-like isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU186698 True 372 TUCP 0.50 4 58215677 58216383

Neighbor

gene id symbol gene type direction distance location
LOC110492604 LOC106561042 coding upstream 104497 58110123 ~ 58111180 (+)
LOC110492579 LOC106561044 coding upstream 106234 58040338 ~ 58109443 (+)
LOC110492531 LOC106561047 coding upstream 418043 57795263 ~ 57797634 (+)
LOC110492500 LOC106561050 coding upstream 426282 57667227 ~ 57789395 (+)
ush1c LOC106561052 coding upstream 560081 57606860 ~ 57655596 (+)
LOC110492647 LOC106561039 coding downstream 37221 58253604 ~ 58296746 (+)
LOC110492681 LOC106561133 coding downstream 99894 58316277 ~ 58322551 (+)
LOC110492721 LOC106561036 coding downstream 581000 58797383 ~ 59033367 (+)
LOC118937284 LOC106609580 coding downstream 1171567 59387950 ~ 59390103 (+)
LOC110492752 LOC106561032 coding downstream 1185794 59402177 ~ 59643249 (+)
G163591 NA non-coding upstream 39378 58116793 ~ 58176299 (+)
G163544 NA non-coding upstream 216182 57995304 ~ 57999495 (+)
G163499 NA non-coding upstream 241898 57903837 ~ 57973779 (+)
G163464 NA non-coding upstream 370240 57845123 ~ 57845437 (+)
G163438 NA non-coding upstream 420815 57794549 ~ 57794862 (+)
G163662 LOC106561040 non-coding downstream 608 58216991 ~ 58223485 (+)
G164289 NA non-coding downstream 279809 58496192 ~ 58497512 (+)
G164304 NA non-coding downstream 287665 58504048 ~ 58504313 (+)
G164307 NA non-coding downstream 289497 58505880 ~ 58506095 (+)
G164312 NA non-coding downstream 292926 58509309 ~ 58509560 (+)
G163513 LOC106561046 other upstream 283686 57928150 ~ 57931991 (+)
G162130 NA other upstream 1162035 57048314 ~ 57053642 (+)
G161687 NA other upstream 1963079 56245044 ~ 56252598 (+)
G160569 NA other upstream 2268432 55946143 ~ 55947245 (+)
G159889 LOC106562215 other upstream 3486817 54728296 ~ 54728860 (+)
G166131 lmod2 other downstream 1729325 59945708 ~ 59953165 (+)
G166878 NA other downstream 2299249 60515632 ~ 60515880 (+)
LOC110493059 LOC100194658 other downstream 2635049 60851417 ~ 60866455 (+)
G167288 NA other downstream 2846210 61062593 ~ 61074591 (+)
G167325 LOC106561003 other downstream 3015813 61232196 ~ 61232545 (+)

Expression


Co-expression Network