Gene
RNA
| Item | Value |
|---|---|
| gene id | G164257 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 58470328 ~ 58470584 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: transcription factor SOX-6-like isoform X2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU187368 | True | 257 | lncRNA | 0.37 | 1 | 58470328 | 58470584 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110492691 | LOC106561037 | coding | downstream | 81027 | 58355406 ~ 58389301 (-) |
| LOC110492633 | LOC106561040 | coding | downstream | 222155 | 58208496 ~ 58248173 (-) |
| LOC110492612 | LOC106561041 | coding | downstream | 269684 | 58118987 ~ 58200644 (-) |
| LOC110492624 | NA | coding | downstream | 275406 | 58186283 ~ 58194922 (-) |
| LOC110492572 | ptpn5 | coding | downstream | 444330 | 57998305 ~ 58025998 (-) |
| LOC110492741 | LOC106561034 | coding | upstream | 873575 | 59344159 ~ 59356495 (-) |
| LOC110492772 | LOC106561030 | coding | upstream | 1346141 | 59816725 ~ 59823875 (-) |
| LOC110492782 | LOC106561029 | coding | upstream | 1356040 | 59826624 ~ 59841614 (-) |
| LOC110492793 | LOC106561028 | coding | upstream | 1402333 | 59872917 ~ 59885714 (-) |
| LOC110492804 | lmod2 | coding | upstream | 1466337 | 59936921 ~ 59948593 (-) |
| G164235 | NA | non-coding | downstream | 10739 | 58459277 ~ 58459589 (-) |
| G164195 | NA | non-coding | downstream | 37323 | 58432805 ~ 58433005 (-) |
| G164080 | NA | non-coding | downstream | 210962 | 58258020 ~ 58259366 (-) |
| G163944 | NA | non-coding | downstream | 448852 | 58021094 ~ 58021476 (-) |
| G164262 | NA | non-coding | upstream | 5149 | 58475733 ~ 58475946 (-) |
| G164552 | NA | non-coding | upstream | 95146 | 58565730 ~ 58566380 (-) |
| G164560 | NA | non-coding | upstream | 105326 | 58575910 ~ 58646454 (-) |
| G164928 | NA | non-coding | upstream | 355850 | 58826434 ~ 58826857 (-) |
| G164963 | NA | non-coding | upstream | 407990 | 58878574 ~ 58883599 (-) |
| G164037 | NA | other | downstream | 295240 | 58173659 ~ 58175088 (-) |
| G164003 | NA | other | downstream | 352107 | 58111341 ~ 58118221 (-) |
| G163839 | LOC106561050 | other | downstream | 680945 | 57776469 ~ 57789383 (-) |
| G165742 | NA | other | upstream | 1011373 | 59481957 ~ 59482314 (-) |
| G165746 | NA | other | upstream | 1016877 | 59487461 ~ 59487840 (-) |
| G166541 | NA | other | upstream | 1449294 | 59919878 ~ 59920330 (-) |
| G166794 | LOC106561021 | other | upstream | 1931764 | 60402348 ~ 60406808 (-) |
