XLOC_002125 (zmp:0000000924)


Basic Information

Item Value
gene id XLOC_002125
gene name zmp:0000000924
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 23511816 ~ 23519898 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004120
AAATCGTAAAGTACTGTGAGTGCCATAAGATTTCACACCCTGACCACAGGTTTagcaaatggtgttaaaagaagAAGTGCCAGCTACTTTAACACACTTCTAGACAGGAACAATGATCAAAACAGTTTCCAGCTCTGAGAGTAAAAATGTctgaggatatttataacaatGTGATCAAGACTGATTCTGAGAGAATGAACAGAGAGCGAGTGGAGATGACGGTGGATATCTATGAGAGTACAGACTGTGTGAGAAATTATGACTTCAGGACAGAGTCAAACAGACAACAACCAATTCAAAATACAGGAAGTGATTCAGTGAAGACGAGATTCTCCAGAGCAGCTCCGGTGTGTTTGGTGCTGTTGTGTTTCCTTCTGCTGACTGCAGTCATAGTGCTGAGTGTCTTCATCTATACAAACAACACAAACTACACTGAAGAGAGACGCCAGCTAATAACTAACATCACCAACCTCACAGGAGCCAAAGACGAGCTGACAAACCTTCTATATGACAAAGACCAACTAATAAAGTGGCTTCAGATTTTTGGTCAAGAAGCTGGATGGTTTTACTATCAATCCAGTTTTTACTACTTTTCCAATGAGACAAAAAGCTGGACTGAGAGCAGAAGATACTGTAGAGACAAAAGAGCAGACCTGATCATCATAAACAACAAACAGGAACAAGATTTTATTATGAAGATCACTGGTGACAATGAATTCTGGATTGGTCAGACTGACAGTGATGAAGAAGGGAATTGGAAATGGGTTGATGGCAGTATACTGACCTCTGGGTTCTGGGCTTCCTCTGGATCAATAAATGAGTCCAATGGAGGGAAAACAGAGAACTGTGCTGTGACCCATTTAAAAAAGCACCCTGAGTTAAAGGGATGGCTTGATGTTACATGTGATGGTGCTCATCAATGGATCTGTGAGAAGTCCATTTTACCAGTTACCATTTAagcaacaaaaatgttttgtttttaatgttaagCTTAAAATCACAACGCCAACCCTAATAAAGTGCATCTAAATATGTTATCTAAAGTCTTCAGGATCACTAAAGCAGGGATTTTCAAACTTTAGATGACATTGAACCCTAAAAATGATCAACTTCATGTGAGGAACAACAATCCTGTACACAAGCTATGTAGCACTTTATGCATATCTTTGGTCAGTCCTAATTATCAGAGGATCGCCATTTTCTAATATTGACCACCATTAATCACAGATCTGTATAATACACTGCAAATTTAATCTTACATCAGAAGCAAAACATTGTTTAcacagtttagtttttttgttcatAGAAATCAGTTGGCGCTACCTAGCATTAATttattgaataaactaataataacttcTATAATACTGTTGTAGTGTTCATCATTTTGCCAGGCTTATTGCTTTGTACACAAGAGtgg

Function

symbol description
zmp:0000000924 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to several human genes including CLEC6A (C-type lectin domain containing 6A); CLEC4A (C-type lectin domain family 4 member A); and CLEC4C (C-type lectin domain family 4 member C).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130530-927 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to several human genes including CLEC6A (C-type lectin domain containing 6A); CLEC4A (C-type lectin domain family 4 member A); and CLEC4C (C-type lectin domain family 4 member C).

Ensembl:

ensembl_id ENSDARG00000088219

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004120 True 1420 mRNA 0.38 5 23511816 23519898

Neighbor

gene id symbol gene type direction distance location
XLOC_002124 si:dkey-181c13.1 coding upstream 6049 23502026 ~ 23505767 (+)
XLOC_002123 si:ch73-122g19.1 coding upstream 68742 23441488 ~ 23443074 (+)
XLOC_002122 CT827808.1 coding upstream 93869 23417833 ~ 23417947 (+)
XLOC_002121 LTN1 coding upstream 295937 23099365 ~ 23215879 (+)
XLOC_002120 slc25a1a coding upstream 442493 23060391 ~ 23069323 (+)
XLOC_002126 zmp:0000000937 coding downstream 1054 23520952 ~ 23523315 (+)
XLOC_002127 CR847844.1 coding downstream 17678 23537576 ~ 23541888 (+)
XLOC_002128 NA coding downstream 22719 23542617 ~ 23544066 (+)
XLOC_002129 zmp:0000001103 coding downstream 28776 23548674 ~ 23550956 (+)
XLOC_002130 CR847844.2 coding downstream 33635 23553533 ~ 23559544 (+)
XLOC_002119 NA non-coding upstream 472526 23034329 ~ 23039290 (+)
XLOC_002117 NA non-coding upstream 546390 22960289 ~ 22965426 (+)
XLOC_002116 FP102052.2 non-coding upstream 555446 22938231 ~ 22956370 (+)
XLOC_002111 AL807389.1 non-coding upstream 664412 22847272 ~ 22847404 (+)
XLOC_002131 NA non-coding downstream 68777 23588675 ~ 23591058 (+)
XLOC_002132 NA non-coding downstream 463409 23983307 ~ 23992917 (+)
XLOC_002134 NA non-coding downstream 576341 24096239 ~ 24096470 (+)
XLOC_002135 NA non-coding downstream 577157 24097055 ~ 24097310 (+)

Expression


Co-expression Network