G166494 (yo84)


Basic Information

Item Value
gene id G166494
gene name yo84
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 60491441 ~ 60492486 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU189720
cagaaagttcctgatttttgcaatgttacgtagatggaaaaaagctgtccttgaaatggtcttgatatgttcttcaaaagagagatcagggtccagagtaacgcagaggtccttcacagttttatttgagacgactgtacaaccattaagattaattgtcagattcaacagaagatctctttgtttcttgggacctagaacaagcatctctgttttgtccgagtttaaaagtagaacgtttgcagccatccacttccttatgtctgaaacacattcttctagcaagggcagttttggggcttcaccatgtttaattgaaatgtacagctgtgtgtcatccgcatagcagtgaaagttaacattatgttttcgaataacatccccaagaggtaaaatatatagtgaaaacaatagtggtcctaaaacggaaccttgaggaacaccgaaatgtacagttgatttgtcagaggacagaccattcacagagacaaactgatatctttccgacagataagatctaaaccaggccagaacttgtccgtgtagaccaatttgggtttccaatctctccaaaagaatgtggtgatcgatggtatcaaaagcagcactaaggtctaggagcacgaggacagatgcagagcctcggtccgatgccattaaaatgtcatttaccaccttcacaagtgccgtctcagtgctatgatggggtctaaaaccagactgaagcatttcgtatacattgtttgtcttcaggaaggcagtgagttgttgcgcaacagccttttctaaaatttttgagaggaatggaagattcgatataggccgatagttttttatattttctgggtcaaggtttggctttttcaagaggctttattactgccacttttagtgagtttggtacacatccggtggatagagagccgtttattatgttcaacataggagggccaagcacaggaagcagctctttcagtagtttagttggaatagggtccagtatgcagcttgaaggtttagaggccatgattattttcatcattgtg

Function

NR:

description
ORF2 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU189720 True 1046 lncRNA 0.40 1 60491441 60492486

Neighbor

gene id symbol gene type direction distance location
LOC110492846 LOC106561021 coding upstream 84621 60398876 ~ 60406820 (+)
LOC110501735 NA coding upstream 203817 60274384 ~ 60288852 (+)
LOC110492825 fezf1 coding upstream 224049 60262699 ~ 60267392 (+)
LOC110501720 cadps2 coding upstream 240344 59986065 ~ 60251097 (+)
iqub iqub coding upstream 514120 59969706 ~ 59977321 (+)
syt8 LOC106561125 coding downstream 135452 60627938 ~ 60639516 (+)
LOC110492948 LOC106561016 coding downstream 162115 60654601 ~ 60666601 (+)
LOC110492922 LOC106561015 coding downstream 190494 60682980 ~ 60695886 (+)
LOC110492964 LOC106561014 coding downstream 204893 60697379 ~ 60712198 (+)
LOC118941118 NA coding downstream 222167 60714653 ~ 60719958 (+)
G166490 NA non-coding upstream 5781 60485373 ~ 60485660 (+)
G166471 NA non-coding upstream 35104 60456127 ~ 60456337 (+)
G166458 NA non-coding upstream 53903 60437287 ~ 60437538 (+)
G166451 NA non-coding upstream 61295 60429929 ~ 60430146 (+)
G166446 LOC106561020 non-coding upstream 68356 60422301 ~ 60423085 (+)
G166497 NA non-coding downstream 3132 60495618 ~ 60495890 (+)
G166867 NA non-coding downstream 15144 60507630 ~ 60507848 (+)
G166886 NA non-coding downstream 27183 60519669 ~ 60519924 (+)
G166888 NA non-coding downstream 28597 60521083 ~ 60521294 (+)
G166899 NA non-coding downstream 44735 60537221 ~ 60537517 (+)
G166131 lmod2 other upstream 538276 59945708 ~ 59953165 (+)
G163660 LOC106561040 other upstream 2275058 58215677 ~ 58216383 (+)
G163513 LOC106561046 other upstream 2559450 57928150 ~ 57931991 (+)
G162130 NA other upstream 3437799 57048314 ~ 57053642 (+)
G161687 NA other upstream 4238843 56245044 ~ 56252598 (+)
G166878 NA other downstream 23146 60515632 ~ 60515880 (+)
LOC110493059 LOC100194658 other downstream 358946 60851417 ~ 60866455 (+)
G167288 NA other downstream 570107 61062593 ~ 61074591 (+)
G167325 LOC106561003 other downstream 739710 61232196 ~ 61232545 (+)
LOC110510683 LOC106560954 other downstream 1039103 61525283 ~ 61535728 (+)

Expression


Co-expression Network