G167709 (LOC106561016)


Basic Information

Item Value
gene id G167709
gene name LOC106561016
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 60664955 ~ 60667126 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU191035
CAAATAACTTTGGCTTATTACAAAcgtggtattgtaaacacatcgtgtCCGGTGTTTGTGCCTGTTTGCAGAGTTTTAATATTATAGGAGAATGTGTCAAATGCACACAAAGAAAAATGTTATGTGCAGTATGTAAACTTGACATGGTGAACAGGAATTACATGTACTCACGGGTGGCCAATAAGGTCTGAAAGCCATGACTCTACTAAGCCACGCCTCCTGAAAATAACCTGAGGATTAATATAAAGGGCCCAGCTGCTAGGTCAACCCGGCATGAGAGTAAATAATACCCAAATGATGGTTTAATGAACCCTTGTTTGGGAAATCCTAACAACCCACCATGTTGGGTTATTCACGCAACCCAACTGGCTGGATCAAAATAACCCAACGTGTGTTCTGTTCGACATTCACCCAGCACTGGGTTACCAAATAATCCaaattgggttgtttttaacccCGCATGCTTTAGAGTGTAGAGAAGACATAGACAAGTCATAAACAAAACATAGACTTGATCACACAGGGACAAGAAATTGTGGCCAACTGAAAAGTATTTATTAATAAGTTTCTGTCCCAATGCTCCATTGCTAGCATCAGCCATGAAATATGATCACACAAACGTTTTCCCATTCGGTCAAACAAATAACTTTGGCTTATTACAAACGCGATATTGTAATCACAATCGTGTccggtgtgtgtgcctgtttgcagagattttaatgtttttttattttttttacagctttgacagtgctactgaccATAGTGGTGGTGCTTGACTTCAATAGATTGCGCATGCAAATTCAGtgcacacaacattctataatagactTGTGTTTTTTGATGTgtaaaatagtgttatttgacgtgtatcttttgaGTATCTTTGGCAAtctgaaaaaaatgtattcatactTTTCTGTTCCACTAATAAAATTGATGTGTACTTTTGTTTTACAGAAACATACACTGGTGCAAATTATACCTCGGTGATAAATATGACAAACTCTGAGCTATGTGTTGCTTCTCAGCCATTTCTAGCATCAGCCATTAAAGATGCTCGCACAAATGGTTTCACATTCGGTCGAACAAATAACTTTGGCTTATCGGGATCTATATGTGGACTAATTTAACTCTCGGACTCAAACATCTTCTTCCTGCCATCCATGCCAGACTTGTCTTCAATGTTCTGACGCCAGTCTCCAACATTACGCAGTTCCTTATCCTGCAATAGCTCTTCTTTCACCTCCTTCTTTACTTGTTTCAGGTTGGCTCTCAGATCCATAGACACCTTGTGCTTAGAGCCCAGCAGAGCCTGGAGCATAGCATCAGCAGACATACGCACTTTCCTCAAAGTTGGCTTCTTGAACTTGCCCTTCAAGTCAATAACTTTAATGTTTAAATCTTCAATCTGGTCAATGGAAGAAG

Function

NR:

description
troponin I, fast skeletal muscle-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU191035 True 1428 lncRNA 0.36 2 60664955 60667126

Neighbor

gene id symbol gene type direction distance location
LOC110492911 LOC106561018 coding downstream 37482 60625142 ~ 60627473 (-)
LOC110492890 LOC106561126 coding downstream 105209 60537619 ~ 60559746 (-)
ppp1r3ab LOC106561019 coding downstream 194397 60448878 ~ 60470558 (-)
LOC110492857 LOC106561020 coding downstream 227395 60419131 ~ 60437560 (-)
ptprz1a ptprz1 coding downstream 292313 60293012 ~ 60372642 (-)
LOC110493006 LOC106561012 coding upstream 168031 60835157 ~ 60850563 (-)
LOC110493125 myod1c coding upstream 214270 60881396 ~ 60883242 (-)
zgc:172145 LOC106561011 coding upstream 221667 60888793 ~ 60899520 (-)
LOC110493151 LOC106561010 coding upstream 377127 61044253 ~ 61059973 (-)
LOC110493152 LOC106561008 coding upstream 431665 61098791 ~ 61115991 (-)
G167014 NA non-coding downstream 53440 60611285 ~ 60611515 (-)
G167013 NA non-coding downstream 53756 60610965 ~ 60611199 (-)
G167008 NA non-coding downstream 57757 60606976 ~ 60607198 (-)
G167006 NA non-coding downstream 58283 60606271 ~ 60606672 (-)
G166980 NA non-coding downstream 76908 60587823 ~ 60588047 (-)
G167719 NA non-coding upstream 4032 60671158 ~ 60671459 (-)
G167706 LOC106561017 non-coding upstream 28137 60695263 ~ 60740351 (-)
G167842 NA non-coding upstream 262526 60929652 ~ 60929867 (-)
G167844 NA non-coding upstream 268346 60935472 ~ 60935735 (-)
G167845 NA non-coding upstream 269848 60936974 ~ 60937229 (-)
G166877 LOC106613263 other downstream 149433 60515226 ~ 60515522 (-)
G166794 LOC106561021 other downstream 258147 60402348 ~ 60406808 (-)
G166541 NA other downstream 744625 59919878 ~ 59920330 (-)
LOC110492782 LOC106561029 other downstream 834940 59826624 ~ 59841614 (-)
G167723 NA other upstream 11597 60678723 ~ 60679041 (-)
G167866 NA other upstream 307636 60974762 ~ 60975021 (-)
G168021 NA other upstream 587386 61254512 ~ 61256015 (-)
LOC110493186 mlkl other upstream 624013 61290149 ~ 61303507 (-)

Expression


Co-expression Network