G167938


Basic Information

Item Value
gene id G167938
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 61119831 ~ 61123748 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU191279
tcaaattccTTGTTGCGGATAAACGACTGTGCGTGATGACATAGAgcaaataaaaataacatttgcGGTTAAATCCCCATGTACCAAATAAAGAAATACACGTCAAATGCATTTCTTTCGCATTTTCAACTGTACTGATGGTTTTCCCACAACCAATCTTGGGTTATATAGCGGTGTATCTGCGCGCGGTTAGCTAGGGCTCATGtaacatgatgagattattatggattaAAGAGCGATATTGTTtttcaaacggcagtcaagcgtCGATGATCACGTCACCAGAATAATaacctcgatatttattggagcattaagctcatcaccttgcactttcacaaCCCTGTTCaattcatcatcatttatttaatatgtagctaataaactgcatgctttcccgacgAGTTGTAGTGGGAGGTCCACACCACAAaccaagtttacttcaatatgaGGGTTATCGATACTTGCGCCTAAAAGCGTTTCCACCGACATTTCCCGCAAAATTAATTTTACCGAAACAAAAAGATCCTGTATTTTGTTTTGtagacatttggaaagtttaccaacACTTGTTCTGTTTCCATTATGCCTGTCATACCATTTCTTATCAGACGTACTTTACTTGCATacaaaggttggatggaaaccttaTTGACTTGAGGAGGAATTTGTTGATTGCGTTATTCTGGGGACAATTTCGGCTGGCATCAAAACTATTTTCTTTACCCCAGGAGGTGCTTCAATGCCACAACTAAAAACTATTATTCATTGTAAATAGTCATAACAATTGCCATTTAAAAATACTACAGGGTTGTTCCACGAAATTAGTGCCTTTTGCTTCCCTTTGATATttgaagtagaaattgtgcacaaatattgcattttaaaagcctCTTAAATGAAGTGCCATTGAATATAGATCACATTGgatttcaatacatttgatttttaaTAAGAATAAAAaacttgctaaagtgccaaaagTCAGCATTTTGACATCCCTCTCTGTGCATCCTCTGTGACCTCAAGGAAAATGTTAACCCTCTTCTTAACCCCAACATTTCTCCAGGATTtcatcatcattgtaaagccctagttattttgttgctttgaccaagtaatttctgaagattatttatttatttaatattattAGTGATACATTTTAAGGTTAAGAAAAaccctgtccctcattttaaggtcaaccctgttatgtaaACTGAACACTATTTTAGTATGctgaaactattccttttaaaatatattttttttcaaaagAGACATTAAACTTTGAACAGTCAAATCAGGTGAGCTCGTTCTactattttttttgtcaatttctggtgttttgtggtggagaaCTGAGTGGGTAAAGCATAAGATGTTGcccatagacaggctagaaattaTTTTAACAATTTCGATGTTTTtagtgaagcttgcattcaattgcctcTCCTTGTTGCACACACCAAGCTTCTATTCCCactgtcacaaggggattcatGTCTGCTTTAAGTTGTCAAccttgttactttatttggcacttaataggcatGCAATTACTGTAGTCATTTCTTTTTTTACCTCTTCAGATGGgaacattttgtttttttgttaagttgaacatgtgctctttgtGACAGAATGTTACAATTTtgtgaaataaaatgtttttatccCCAGCGTGTTTAACTattcaaaaggcacctaattggTGGAACGACCTTACTGTATAATGTTGTACTGTATTTTAAACCATGGCTATTTGAAAACAACTGTTAAAATAAGTATATTTCACTTTCTTTATGACCAGCAAGAAAATAAATCCAGACTATTTACTCTGGAAAAAATAAAGTTGAAGATGTGATGGTTTTTCATAGATTCCcagtatattattatattaagCATTTGCGTTTACTTTGCATTATTATATATGTTTCATGAAGTCTCGTGGTTTTTTGTGTTTATAAAATACTGAATGTAAACTATATTGTTGACAGTAGTAAAGGTATGACTATTTTCGTATAACTGAGTATGCATATTTATTTAACATACATTTGAGTAGCCTAAGCCTAGAAATGTGGTGGCTTATTGTTTGGCAGTGTTCTCTGTACTCAGTTCAATAATTTACCTGACTTGTAAACAATTAGTAATTAGgatattattttctttatttttatctGTGGACTATTCTAATTTGATTGTCTATTTTATATTGTCTTGTTATGGGCAATTAAGTTGGCCAGGCAACCACAATAAACACTGTATCAACCATGTGGCTAAACTTTGTCAATGTTGACAAGATACGCATAGACCAAGGGCTCTATTCCATCCCGTATAAGAcatttaAAGAAATGTCCTATTGAGCGGTCGGCTCTGCAGCGTTAACTATGAATGCAGTCTCCATTAACGAGAGAACATTGCTTTTATTACATTTCCATCACAATGTAACGATGAATTTCcacgatacagattgaatagagcccctagTTTATTTTCGAAATAGGTCTGGTCATCCTTTGGCACCGGACATTTGTTTGCGCACAGTCTTGTAAAGTAgtctacttaagtaaaaatacgtTAAAGTAGCAtcctacttaagtcgttttttgcgGTATCTGTGCTTTACTATGTATATTGTTGAGAAcctttactccactacattcctaaagaaaacaatgtactttttacaccaTACATTTTTCTTAACACTCAAaggtactcattacattttgaatgcttagcagcacaggaaatggtccaattcacgcaccttATCAAGAGaccgtccctggtcatccctattgcctccg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU191279 True 2816 lncRNA 0.35 2 61119831 61123748

Neighbor

gene id symbol gene type direction distance location
LOC110493152 LOC106561008 coding downstream 3840 61098791 ~ 61115991 (-)
LOC110493151 LOC106561010 coding downstream 59858 61044253 ~ 61059973 (-)
zgc:172145 LOC106561011 coding downstream 220311 60888793 ~ 60899520 (-)
LOC110493125 myod1c coding downstream 236589 60881396 ~ 60883242 (-)
LOC110493006 LOC106561012 coding downstream 269268 60835157 ~ 60850563 (-)
LOC110493153 LOC106561006 coding upstream 2350 61126098 ~ 61172031 (-)
LOC110493154 LOC106561003 coding upstream 66932 61130321 ~ 61232604 (-)
LOC110493155 LOC106561004 coding upstream 109285 61233033 ~ 61250701 (-)
LOC110493207 LOC106561002 coding upstream 145645 61269393 ~ 61282546 (-)
LOC110493186 mlkl coding upstream 168339 61290149 ~ 61303507 (-)
G167922 NA non-coding downstream 22240 61055844 ~ 61097591 (-)
G167845 NA non-coding downstream 182602 60936974 ~ 60937229 (-)
G167844 NA non-coding downstream 184096 60935472 ~ 60935735 (-)
G167842 NA non-coding downstream 189964 60929652 ~ 60929867 (-)
G167706 LOC106561017 non-coding downstream 379480 60695263 ~ 60740351 (-)
G167994 NA non-coding upstream 71676 61195424 ~ 61195689 (-)
G168009 NA non-coding upstream 106605 61230353 ~ 61230592 (-)
G168024 NA non-coding upstream 135321 61259069 ~ 61259943 (-)
G168033 NA non-coding upstream 144818 61268566 ~ 61269018 (-)
G167866 NA other downstream 144810 60974762 ~ 60975021 (-)
G167723 NA other downstream 440790 60678723 ~ 60679041 (-)
LOC110492890 LOC106561126 other downstream 570652 60537619 ~ 60559746 (-)
G166877 LOC106613263 other downstream 604309 60515226 ~ 60515522 (-)
G168021 NA other upstream 130764 61254512 ~ 61256015 (-)
G168078 NA other upstream 366686 61490434 ~ 61491671 (-)
G168141 NA other upstream 391489 61515237 ~ 61515656 (-)
LOC110493507 LOC106560984 other upstream 2023026 63146769 ~ 63224837 (-)

Expression


Co-expression Network