Gene
RNA
| Item | Value |
|---|---|
| gene id | G167328 |
| gene name | LOC106561004 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 61238410 ~ 61244489 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| E3 ubiquitin-protein ligase RFWD3-like isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU190627 | True | 424 | lncRNA | 0.63 | 2 | 61238410 | 61244489 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110493175 | LOC106561005 | coding | upstream | 46561 | 61130439 ~ 61193594 (+) |
| LOC110493150 | cacna2d4 | coding | upstream | 146990 | 60999577 ~ 61091420 (+) |
| LOC118937285 | NA | coding | upstream | 362973 | 60873225 ~ 60875437 (+) |
| LOC110493059 | LOC100194658 | coding | upstream | 371965 | 60851417 ~ 60866455 (+) |
| LOC110493043 | LOC106561013 | coding | upstream | 391435 | 60781715 ~ 60846975 (+) |
| LOC118941124 | NA | coding | downstream | 13227 | 61257716 ~ 61259025 (+) |
| LOC118941126 | NA | coding | downstream | 66839 | 61311328 ~ 61312547 (+) |
| LOC110493325 | LOC106561124 | coding | downstream | 232622 | 61477111 ~ 61479816 (+) |
| LOC110493335 | LOC106560997 | coding | downstream | 254607 | 61499096 ~ 61509316 (+) |
| LOC110501762 | LOC106560954 | coding | downstream | 275996 | 61520483 ~ 61525531 (+) |
| G167381 | NA | non-coding | upstream | 7099 | 61231086 ~ 61231311 (+) |
| G167326 | LOC106561003 | non-coding | upstream | 18771 | 61216658 ~ 61219639 (+) |
| G167365 | NA | non-coding | upstream | 42175 | 61195902 ~ 61196235 (+) |
| G167229 | NA | non-coding | upstream | 111876 | 61119735 ~ 61126534 (+) |
| G167397 | NA | non-coding | downstream | 6374 | 61250863 ~ 61251082 (+) |
| G167402 | NA | non-coding | downstream | 16994 | 61261483 ~ 61261772 (+) |
| G167185 | NA | non-coding | downstream | 45660 | 61290149 ~ 61292412 (+) |
| G167455 | LOC106561000 | non-coding | downstream | 137589 | 61382078 ~ 61415147 (+) |
| G167487 | NA | non-coding | downstream | 174311 | 61418800 ~ 61419020 (+) |
| G167325 | LOC106561003 | other | upstream | 5865 | 61232196 ~ 61232545 (+) |
| G167288 | NA | other | upstream | 163819 | 61062593 ~ 61074591 (+) |
| G166878 | NA | other | upstream | 722530 | 60515632 ~ 60515880 (+) |
| G166131 | lmod2 | other | upstream | 1285245 | 59945708 ~ 59953165 (+) |
| LOC110510683 | LOC106560954 | other | downstream | 287100 | 61525283 ~ 61535728 (+) |
| G167609 | LOC106560954 | other | downstream | 482470 | 61726959 ~ 61727454 (+) |
| LOC118936783 | LOC106560954 | other | downstream | 635281 | 61870393 ~ 61880657 (+) |
| G169130 | NA | other | downstream | 1540869 | 62785358 ~ 62785643 (+) |
| G170131 | NA | other | downstream | 2575972 | 63820461 ~ 63830320 (+) |
