G167455 (LOC106561000)


Basic Information

Item Value
gene id G167455
gene name LOC106561000
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 61382078 ~ 61415147 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU190760
AGCCCTTTGTGTTTGAGTCAAGGCCATACATAGAGACTTCCTGAGAACTCGAGAACGCACCAGTCCACAGGCAAATGTTTTAGGTCGAGAAattgcacgcacgcacacccaggctctctctcccttctccctctcacctctctgaaCTTCTGAAGGTAGAGTTTCAGGGGCTCCACGTACATGTCGAAGCCCAGGGTGGACATGGCAAACAGGATGTCCTCGCCGTTGATGGTCTTCCTCTTCTCCTGGTGGCAGCGCTCACTGGCCTCCGACGTGATGAAGCTGATGAACTCACTGACACACTCCTGCACACACTCCTTGGCATCTTTTGCTATCTTTCCTGTCTGTGGGACGGCGTTCTTCATGATGCGAGCCACGTTAGCGATGGGGAGGTAGATGTCCTGCTCACGGAAGTTTTCCTTGCTGCCGTTTCCTTCCTCATGGTCATGCAGGCTCTCATCCCCATCAtCGTCCTGTGATTGAAGAACGTAGTGGCTTCCTGCCATGTACTCCCCTGACATTCCCAACTGAGAGGCGTCGGTGGTTGAACTGTCGCCGTCCATGATTTGGAAAAATTCTTCATGTTTAAACAATATTCAAGATGTCCCGTCGACTTCACCTGTTCGACCACCATGCCTAACATAGCCAATTACCATAGCTACATTTGACAGATGATTTTAGGAATTGTCTGAGCTAGTCTTTGTTTGGAGGGCCTGTGCGTGAGAAACCATTTACTAGCGAGTCCTGTAATTTAACAACTCGCAGTCTTAATTTCTACTTTCCCGCTGCTAATTCCCATTCACACTACCATCAAATAAAAAGAAACAGTCAAATGCGGAGATTTCGATTCGAGGTAAAGCGAAATCGGATAGCAATCATTGGCCGGAGCCAGCCACAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU190760 True 898 lncRNA 0.49 4 61382078 61415147

Neighbor

gene id symbol gene type direction distance location
LOC118941126 NA coding upstream 69531 61311328 ~ 61312547 (+)
LOC118941124 NA coding upstream 123053 61257716 ~ 61259025 (+)
LOC110493175 LOC106561005 coding upstream 190229 61130439 ~ 61193594 (+)
LOC110493150 cacna2d4 coding upstream 290658 60999577 ~ 61091420 (+)
LOC118937285 NA coding upstream 506641 60873225 ~ 60875437 (+)
LOC110493325 LOC106561124 coding downstream 61964 61477111 ~ 61479816 (+)
LOC110493335 LOC106560997 coding downstream 83949 61499096 ~ 61509316 (+)
LOC110501762 LOC106560954 coding downstream 105338 61520483 ~ 61525531 (+)
LOC110510683 LOC106560954 coding downstream 110136 61525283 ~ 61535728 (+)
LOC118941130 NA coding downstream 123718 61538865 ~ 61567852 (+)
G167185 NA non-coding upstream 89666 61290149 ~ 61292412 (+)
G167402 NA non-coding upstream 120306 61261483 ~ 61261772 (+)
G167397 NA non-coding upstream 130996 61250863 ~ 61251082 (+)
G167328 LOC106561004 non-coding upstream 137589 61238410 ~ 61244489 (+)
G167381 NA non-coding upstream 150767 61231086 ~ 61231311 (+)
G167487 NA non-coding downstream 3653 61418800 ~ 61419020 (+)
G167493 NA non-coding downstream 9819 61424966 ~ 61425207 (+)
G167494 NA non-coding downstream 12030 61427177 ~ 61427482 (+)
G167509 NA non-coding downstream 82342 61497489 ~ 61498830 (+)
G167535 NA non-coding downstream 97074 61512221 ~ 61512476 (+)
G167325 LOC106561003 other upstream 149533 61232196 ~ 61232545 (+)
G167288 NA other upstream 307487 61062593 ~ 61074591 (+)
LOC110493059 LOC100194658 other upstream 515623 60851417 ~ 60866455 (+)
G166878 NA other upstream 866198 60515632 ~ 60515880 (+)
G166131 lmod2 other upstream 1428913 59945708 ~ 59953165 (+)
G167609 LOC106560954 other downstream 311812 61726959 ~ 61727454 (+)
LOC118936783 LOC106560954 other downstream 464623 61870393 ~ 61880657 (+)
G169130 NA other downstream 1370211 62785358 ~ 62785643 (+)
G170131 NA other downstream 2405314 63820461 ~ 63830320 (+)

Expression


Co-expression Network