G167609 (LOC106560954)


Basic Information

Item Value
gene id G167609
gene name LOC106560954
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 61726959 ~ 61727454 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU190931
GTTTCAGAGTGAAATGGAAGAGGGGAAGAACCTTCACTTGGCCGAACTGGCTTGGGATGTGAAACGACGCCTCAGGCTTAAGGAGCTGGAAAGAGAAGTGTGCAGGGAGCTGCGCCTGGAGCGCCGAATCCGCTGGTCGGTGATTGGACAGCCTGGTAGCCAGATGGGAGATTGGAGACCCCTGggcatggagacacacacacctctgggaATGGACTCTCCCTTCAGACACTCCACCTCCTCGATGGACACTCTTTCCAGTCAGATCTCGACTGAGAACCTCGAGGTTGCTAGGCTACATACTGCCAGACCACATATTGCCAGACCACAAACTACCAGACCACGTTCTGCCAGACCACCATCTGAAAG

Function

NR:

description
uncharacterized protein LOC110517043

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU190931 True 369 TUCP 0.59 2 61726959 61727454

Neighbor

gene id symbol gene type direction distance location
LOC110491115 NA coding upstream 16854 61708449 ~ 61710105 (+)
LOC118941131 LOC106560954 coding upstream 27294 61639655 ~ 61699665 (+)
LOC118936777 LOC106560954 coding upstream 41088 61678949 ~ 61685871 (+)
LOC110517167 LOC106560954 coding upstream 110500 61611959 ~ 61616459 (+)
LOC118941130 NA coding upstream 159107 61538865 ~ 61567852 (+)
LOC110512213 LOC106560954 coding downstream 30787 61758241 ~ 61759129 (+)
LOC110491157 LOC106560954 coding downstream 117942 61845396 ~ 61850758 (+)
LOC118941134 LOC106560954 coding downstream 134792 61862246 ~ 61870358 (+)
LOC118936783 LOC106560954 coding downstream 142939 61870393 ~ 61880657 (+)
LOC118937286 LOC106560954 coding downstream 175877 61902987 ~ 61905185 (+)
LOC110501762 LOC106560954 non-coding upstream 201876 61520483 ~ 61525531 (+)
G167539 NA non-coding upstream 207424 61519165 ~ 61519535 (+)
G167535 NA non-coding upstream 214483 61512221 ~ 61512476 (+)
G167509 NA non-coding upstream 228129 61497489 ~ 61498830 (+)
G167616 NA non-coding downstream 28761 61756215 ~ 61834645 (+)
G167622 NA non-coding downstream 67126 61794580 ~ 61794870 (+)
G168279 NA non-coding downstream 209594 61937048 ~ 61937284 (+)
G168280 NA non-coding downstream 210032 61937486 ~ 61937775 (+)
LOC110510683 LOC106560954 other upstream 194632 61525283 ~ 61535728 (+)
G167325 LOC106561003 other upstream 494414 61232196 ~ 61232545 (+)
G167288 NA other upstream 652368 61062593 ~ 61074591 (+)
LOC110493059 LOC100194658 other upstream 860504 60851417 ~ 60866455 (+)
G166878 NA other upstream 1211079 60515632 ~ 60515880 (+)
G169130 NA other downstream 1057904 62785358 ~ 62785643 (+)
G170131 NA other downstream 2093007 63820461 ~ 63830320 (+)
G170150 LOC106560975 other downstream 2145794 63873248 ~ 63878233 (+)
map1lc3b map1lc3b other downstream 3803692 65531126 ~ 65536787 (+)

Expression


Co-expression Network