G168539


Basic Information

Item Value
gene id G168539
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 62315751 ~ 62315972 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU191923
gtcgatgatggctcagaaagccttttggagtgggtctgtgggcTTTTCcatgtttattttacctttattgaactaggcaagtcagttaagaacaaattcttataggaacagtgggttaactgcctgttcgggggcagaacgacatatttgtaccttgtcaactctggggtttgaacttgcaaccttccggttactagtccaacactctaaccactaggttac

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU191923 True 222 lncRNA 0.44 1 62315751 62315972

Neighbor

gene id symbol gene type direction distance location
ppm1h LOC106560995 coding upstream 161255 62092419 ~ 62154496 (+)
avpr1aa LOC106560996 coding upstream 253007 62057929 ~ 62062744 (+)
LOC110491137 LOC106560954 coding upstream 399632 61910943 ~ 61916119 (+)
LOC118937286 LOC106560954 coding upstream 410566 61902987 ~ 61905185 (+)
LOC118936783 LOC106560954 coding upstream 435094 61870393 ~ 61880657 (+)
LOC118941151 NA coding downstream 204560 62520532 ~ 62530986 (+)
LOC110493430 NA coding downstream 246211 62562183 ~ 62618837 (+)
pparab ppara coding downstream 324536 62640508 ~ 62704574 (+)
LOC110493442 yars2 coding downstream 407473 62723445 ~ 62737914 (+)
LOC118941152 NA coding downstream 610774 62926746 ~ 62927472 (+)
G168460 mon2 non-coding upstream 120283 62194155 ~ 62195468 (+)
G168409 NA non-coding upstream 198154 62117175 ~ 62117597 (+)
G168335 NA non-coding upstream 276928 61991511 ~ 62038823 (+)
G168293 NA non-coding upstream 369307 61946204 ~ 61946444 (+)
G168291 NA non-coding upstream 370333 61945109 ~ 61945418 (+)
G168985 NA non-coding downstream 153957 62469929 ~ 62471380 (+)
G168986 LOC106560992 non-coding downstream 158168 62474140 ~ 62476409 (+)
G168991 LOC107388424 non-coding downstream 166155 62482127 ~ 62482380 (+)
G168992 NA non-coding downstream 166768 62482740 ~ 62482954 (+)
G167609 LOC106560954 other upstream 588297 61726959 ~ 61727454 (+)
LOC110510683 LOC106560954 other upstream 783424 61525283 ~ 61535728 (+)
G167325 LOC106561003 other upstream 1083206 61232196 ~ 61232545 (+)
G167288 NA other upstream 1241160 61062593 ~ 61074591 (+)
G169130 NA other downstream 469386 62785358 ~ 62785643 (+)
G170131 NA other downstream 1504489 63820461 ~ 63830320 (+)
G170150 LOC106560975 other downstream 1557276 63873248 ~ 63878233 (+)
map1lc3b map1lc3b other downstream 3215174 65531126 ~ 65536787 (+)
jph3 jph3 other downstream 3277545 65593468 ~ 65648660 (+)

Expression


Co-expression Network