G168986 (LOC106560992)


Basic Information

Item Value
gene id G168986
gene name LOC106560992
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 62474140 ~ 62476409 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU192381
GCTTTAGTCAGCAGACTATCCGGCTAATTAAACTACTATTGTATTTGAGTAGCACCAACACTAAATTTACATCGTCACTACAATAAAACAGCACCTTTGACCTAAATTGCAACGTTTATTATTCACTGTGCACACAATGACAGATCTGTCTATCTCATGAAAAACCAAGAAAATTAAACAGGAAAGAAACTGACCTGTCTGAGAAGTAAACCTTGCGTCGTCATGGTCTCAAATCAGCAGAAAAACAAATGGTCTCGTATCAACATATGAAGCTTAAACACACAGAAAAATAGAGGAGGAGCTGTATGATCGATTATGATAAAGTGCCAAAATGATGTGTTCTGATGTTCTACGTCACTGAAACCTGATGTAACCGGACACTTTTGTATAGCATAACCGCAACCAATGAATACAGATGAGAATGAGATCACAGCTCTGTATGCAGTGAATGAATGAAGCCATTGGCTGACGCCTTGCATTTCCCCTCGAGACCAGCAGACTTCACTCACTTTGATTCTCAgtcttgtttttttctttgcaatACATTTCAAAAACTCTGTCAAATTGGAGTTCATATGATTTCCATTTGAGGCATATCTCGACAACACATGCGGCAACATGTCAATATCACGTTAAATTAATTGAGCAAGGGTCTTTGTGGTTAAGAAAGGAGTGCTCTTTCTACTGTCTTTGCTTGAAAATGCAACATAAGCCAGGCAGGATGTAGGCCTACCATCTGGTTCATAAATGACTGCAAACAAAAGCTATGCTACAGCAGAATAGAACCGACGTGATTGATTCTACTTGCAAAATACACTTTAAtgttgatttttgttgttgttgtagtcaaCACACCAATAGCAATGGAACCATTTTAGAAAAAAGGGGGATTGATAGTGGGATGGGTACCATTTTCTAAAAGACACGCATAATCTTCAGTCAGAGTTttctaaaaaaaagtattttttacaCTTAGTACAAAAAAGACATTTCTACCCGTTAGTGCTTTGTTTTAAGATACTATAACATAAATAAACCATTTATTTTCAGTGTTCAAACAGACAGTTCCAGTGTGACTGGAAAACGGACATACTCTGTTCCAGTTGGCAGCAGAGGGCTTACTATAGAGACTCAGCTTTCGGTGCGCCCCAAGGCACCACGCTAAAACAGCGTTCTTCATGTCTACACAACTCCAAAAAGAAAACACCTCCTGTTTGGGGGCTAAAATATTcacctctgctctctccctctgtggaaaaacaaaagaaaactCCAAAGAGTTCTTACTAGAAGACTTTTAGATGACTCTTTCCCAGAGTCTCATCCCTCAACAGTTACTGTCAATTTCTACCACATCTCCAGTCCCTTTCTGGTCCATTTAGAAGCCATTCCGGGaaataaagaactacaaatcccAGAGTGCAATGCACAGTTCCCGTCCAGGCACTATTTGTTTCCTGTAGTCCCAACTTTTAGAGTCACTTTGAATACATCACTACATGAGCACACATTATTTTGTCTCAGTCGGTCTAAGATTTGGGGTAGTATTATTACCTATTGATATTTAGCCTTTACTTTCTTAAAAAGCAAATTTTGATTCTGCTGTGCAAAACGATGCCATGAAGAGCTGACATGAAAAATTCCATTCCTTTTTTATTGTAAAGTCTTTCATTGTTCCTGTTCCAAGACATGTCCATTTATCTTTCCTCTGGGGGTCTTCCTCCTCATCCAACTAGTCCTGCTACGCCCCTCCCCGTCATAGTACCGTACTGTAGGTCCGTTATGACAAACCCCTTTATTTGCAGGTAAACACCTCCGTCCTCTCGCTGCACGTGTTGCACTTGACAAAGCAGCACCACTGGAACTTACAGTTGCACTGCCACACTTTGGTGTACTGGTGCGTGTTGTAGCCCCGGCCGCAGCACATGAGGTCGCAGCCGTCCGTGTGGGGCGAGGTGCGGTTACACAGCCTCCCCTGGGTACCCACGCTCCCCGTGGCCGCGTCCTCCTCGCAGTAGTTGGGCGACCTCTCAATGTAGACGAGGTCGGTCTCCATGGGCTTGCGGAAGCCCTGGGTCTTCTTCACCTTGAGGAAGGTGGGTTGGCGTAGTCGGCTGGCCCGGACCACTTCCACATGAACCGCCTCGTTGTACTTGTCCTTCAGGATATAGCCGATCTCTCTGAACTTGGGCAGGGTCGTCCAGCAGGTCTTGGTAGTGCAGGAGCCCGACACGCCGTGACACTTACACTCCAACTTCATCCGCTCTTCC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU192381 True 2270 lncRNA 0.42 1 62474140 62476409

Neighbor

gene id symbol gene type direction distance location
fbln1 fbln1 coding upstream 104832 62283204 ~ 62369308 (+)
ppm1h LOC106560995 coding upstream 319644 62092419 ~ 62154496 (+)
avpr1aa LOC106560996 coding upstream 411396 62057929 ~ 62062744 (+)
LOC110491137 LOC106560954 coding upstream 558021 61910943 ~ 61916119 (+)
LOC118937286 LOC106560954 coding upstream 568955 61902987 ~ 61905185 (+)
LOC118941151 NA coding downstream 44123 62520532 ~ 62530986 (+)
LOC110493430 NA coding downstream 85774 62562183 ~ 62618837 (+)
pparab ppara coding downstream 164099 62640508 ~ 62704574 (+)
LOC110493442 yars2 coding downstream 247036 62723445 ~ 62737914 (+)
LOC118941152 NA coding downstream 450337 62926746 ~ 62927472 (+)
G168985 NA non-coding upstream 2760 62469929 ~ 62471380 (+)
G168539 NA non-coding upstream 158168 62315751 ~ 62315972 (+)
G168460 mon2 non-coding upstream 278672 62194155 ~ 62195468 (+)
G168409 NA non-coding upstream 356543 62117175 ~ 62117597 (+)
G168335 NA non-coding upstream 435317 61991511 ~ 62038823 (+)
G168991 LOC107388424 non-coding downstream 5718 62482127 ~ 62482380 (+)
G168992 NA non-coding downstream 6331 62482740 ~ 62482954 (+)
G169015 NA non-coding downstream 134955 62611364 ~ 62612530 (+)
LOC118936783 LOC106560954 other upstream 593716 61870393 ~ 61880657 (+)
G167609 LOC106560954 other upstream 746686 61726959 ~ 61727454 (+)
LOC110510683 LOC106560954 other upstream 941813 61525283 ~ 61535728 (+)
G167325 LOC106561003 other upstream 1241595 61232196 ~ 61232545 (+)
G167288 NA other upstream 1399549 61062593 ~ 61074591 (+)
G169130 NA other downstream 308949 62785358 ~ 62785643 (+)
G170131 NA other downstream 1344052 63820461 ~ 63830320 (+)
G170150 LOC106560975 other downstream 1396839 63873248 ~ 63878233 (+)
map1lc3b map1lc3b other downstream 3054737 65531126 ~ 65536787 (+)
jph3 jph3 other downstream 3117108 65593468 ~ 65648660 (+)

Expression


Co-expression Network