G169015


Basic Information

Item Value
gene id G169015
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 62611364 ~ 62612530 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU192413
TGCTCCAGTATGGCACAGAACAGCCTACATATTGCATTTGTGGTGATGAATTATAAATGATATTGCATAACCGTTCCCGTTATAACCTTATCTGTGAATCATCTACCCAGAGACATGCAAGCATGGATACATTTCCCCGTGCTTGCAGTCTAGACCGGACCTTGTGGAAATGATACTGTGAAGTTGCCTGGCCTCTGGTGGGCCTGCGTTTGTTTATGGTTACACACAAAGCAGATGGCCGCATATCTCACACTAACACTCACTGACACtgccacaagcacacacacactcacccacgcacacactcacactctcgcACACTCACACGCCTGAGGAACAATCGAGTTGGACTCGTGAGCTATTTATTTGATCTCTGATCTCTCTTTCTATTCTCCCGTTATCAATGGGTTTTATGATTGTCCCATGTGACTCATGAGGATACTTAACctgagtagctagctagcattgacAACAGTGGTTTACATGGCAGACCTGATCCTGCCAAGGGCTCAAATGGTAAAATACAGCAGCTAACTGTAGCTAACTGTATGTAAGCTAACTGTATGTCGGCTATAGTTAACATTAGCTATTTGTAGCTAACAGTACAATAGATAACtaactgtacagtagtagctAGCTGTATCCTAGCTAAATGTACAGTAGCTAACCATCCTAGCTGCTAACCTGTTCATCAAAGTTACTGTTTATACTGTAGCCCCCTGTCCTCCCACTCTCTCAGCCagttcagaggagaggagaggtatgtgtCCCACCCTCTATTAATAGACCCTACGACAGATGGAGCTCTGTGTAGGCAGGGCACTACGCGGCAGGCGCAAGTCTCGTCAGATGGCCAGGCGCTGGGGTACCGTCAGATCGAGGGGTGCAGGGGGGACAGCCAGAGTGGAGGGTTGGACGTGTCAGAACTGTTGATTTGTCTTAATGGACCCTCCGGGTCACCAGGAAGATGTATGGCTCCATCAGTGCTTCTGTTAGCATGGTGGCTCGTGGGTATTAGTGGGACtatggtcattactgagacgaaGGACAAAGGGGCGATAAGACCTGAGGAGTGAATAGAACAGGAGCCATAAAGCAGGTGGGCAGAAGAGTATTTTGGGTCATATTGCTGATCACACAGTCCCTGTACAATAGTGAGCCTGGAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU192413 True 1167 lncRNA 0.49 1 62611364 62612530

Neighbor

gene id symbol gene type direction distance location
LOC118941151 NA coding upstream 80378 62520532 ~ 62530986 (+)
fbln1 fbln1 coding upstream 242056 62283204 ~ 62369308 (+)
ppm1h LOC106560995 coding upstream 456868 62092419 ~ 62154496 (+)
avpr1aa LOC106560996 coding upstream 548620 62057929 ~ 62062744 (+)
LOC110491137 LOC106560954 coding upstream 695245 61910943 ~ 61916119 (+)
pparab ppara coding downstream 27978 62640508 ~ 62704574 (+)
LOC110493442 yars2 coding downstream 110915 62723445 ~ 62737914 (+)
LOC118941152 NA coding downstream 314216 62926746 ~ 62927472 (+)
mrps35 LOC106560988 coding downstream 394793 63007323 ~ 63022862 (+)
LOC110493518 pus7 coding downstream 613640 63226170 ~ 63238260 (+)
G168992 NA non-coding upstream 128410 62482740 ~ 62482954 (+)
G168991 LOC107388424 non-coding upstream 128984 62482127 ~ 62482380 (+)
G168986 LOC106560992 non-coding upstream 134955 62474140 ~ 62476409 (+)
G168985 NA non-coding upstream 139984 62469929 ~ 62471380 (+)
G169013 NA non-coding downstream 8702 62621232 ~ 62621911 (+)
G169016 NA non-coding downstream 12546 62625076 ~ 62625794 (+)
G169069 NA non-coding downstream 19339 62631869 ~ 62632110 (+)
G169082 NA non-coding downstream 99328 62711858 ~ 62712057 (+)
LOC118936783 LOC106560954 other upstream 730940 61870393 ~ 61880657 (+)
G167609 LOC106560954 other upstream 883910 61726959 ~ 61727454 (+)
LOC110510683 LOC106560954 other upstream 1079037 61525283 ~ 61535728 (+)
G167325 LOC106561003 other upstream 1378819 61232196 ~ 61232545 (+)
G167288 NA other upstream 1536773 61062593 ~ 61074591 (+)
G169130 NA other downstream 172828 62785358 ~ 62785643 (+)
G170131 NA other downstream 1207931 63820461 ~ 63830320 (+)
G170150 LOC106560975 other downstream 1260718 63873248 ~ 63878233 (+)
map1lc3b map1lc3b other downstream 2918616 65531126 ~ 65536787 (+)
jph3 jph3 other downstream 2980987 65593468 ~ 65648660 (+)

Expression


Co-expression Network