G169651 (LOC106560987)


Basic Information

Item Value
gene id G169651
gene name LOC106560987
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 63036655 ~ 63037957 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU193074
agttcatataaggaaatcagtcaattgaaatagaattcattaggccctaatctacagatttcacatgactgggcaggggcacagccatgggtgcaACATGGCCAATGTACTGAATAAATGCACTTGTAAATGTAGAGTGGGAAAGTGATTAAAACATACAATCCCTGGATGAAGAAAATATAATTTCCAGAAGTATTCATGATATGAATCGGCCCACTTGAGCATATCATCAATCATTGCATCTTACTTGTCTCCCCTGTGAGTCGTTGTCTACTTTTAAGATGTGTGTCAATCCTGAAACATCTGTCACAACAACTGCAACGATAtcatttctcccctgtgtgggaCTTTCTATGATATTTCAGATTTCCACTCTGATTGAATGCTTTGCCACAATCAGGGCAGCGaaatggcttctcccctgtgtgaatccGGATGTGTTTCTTCAGATCGCCGCTGGTGCTGAATCCTTTGCCACAAACAGGGCAGTGACACGTTTTCTCCCCTGTGTGGCTTCTCATGTGCACGATCAGATTGCTGTTTAAGGTGAACCATTTACTACAAACATGACAACAATACCTAGCTGCAATGTGAGTTTGGAGGTGATCTTTCATACTTTCTGTTGACGCCATATGCTTTCCACACACTCCACAAAGTGATTCTTTATCGTTTGTGTGAGTTTGAACATGTTTAAATAATAAGCCCATGTAATGAAAATACTTGCCACACACCTTACAACAACCAGGAGTAGCATGACCTTGCCTAGGTGATTTCAGGTGGAACAACGGTGTGGATTTGTTATCCTTAGTGTTGATAAGGGAGCTTTGTAATTTTACCATCTTTATTCTCTGTGATTTGACTGACTTGAAACCTGACGGAGGTCCGCCAGTCTCCATCCCACTGTCACTTTCACTGTTTTCACTCGGAGCTGCAGAACAGTCTGGATTTACTGCAGAGAGGGGCTGAAAGACACTGGTTGGTTCTGATTCTCCGTAGTCCTCTCCATCAGGTTCTGTTTTGATCTGTTCAGTTGTAGTGCTGGgtagagtgtctctctctctgtttccttcctTTTGGGCTTGATAGGGATGTGAGGGTTGAGTTGGGTCATAAGCAGGAGTGAATATGGAGTCTTTAGTGTGAGCCTCAAGCCCTTGAGgctgctcttcctcctgactGGCCCCACGTTCCTCTTTGATCTGTGTGGACTCTGGGTCCTCATGCCTCAGACTGGGGCTCCACTCCTGCTCACAGTGCTGCTGCTCCGGGGGAATCTCCacttcagagacagagagacagagct

Function

NR:

description
zinc finger and SCAN domain-containing protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU193074 True 1303 lncRNA 0.44 1 63036655 63037957

Neighbor

gene id symbol gene type direction distance location
mrps35 LOC106560988 coding upstream 13793 63007323 ~ 63022862 (+)
LOC118941152 NA coding upstream 109183 62926746 ~ 62927472 (+)
LOC110493442 yars2 coding upstream 298741 62723445 ~ 62737914 (+)
pparab ppara coding upstream 332829 62640508 ~ 62704574 (+)
LOC110493430 NA coding upstream 417818 62562183 ~ 62618837 (+)
LOC110493518 pus7 coding downstream 188213 63226170 ~ 63238260 (+)
hdac10 hdac10 coding downstream 201095 63239052 ~ 63248916 (+)
parvb parvb coding downstream 211532 63249489 ~ 63262311 (+)
parvg parvg coding downstream 224821 63262778 ~ 63275177 (+)
plxnb2b LOC106560979 coding downstream 487825 63525782 ~ 63710132 (+)
G169646 NA non-coding upstream 6099 63030349 ~ 63030556 (+)
G169641 NA non-coding upstream 10165 63026283 ~ 63026490 (+)
G169613 NA non-coding upstream 33891 63002554 ~ 63002764 (+)
G169611 NA non-coding upstream 34216 63002113 ~ 63002439 (+)
G169603 NA non-coding upstream 40409 62996006 ~ 62996246 (+)
G169653 NA non-coding downstream 3741 63041698 ~ 63042006 (+)
G169654 NA non-coding downstream 4632 63042589 ~ 63042801 (+)
G169655 NA non-coding downstream 5932 63043889 ~ 63044095 (+)
G169675 NA non-coding downstream 13392 63051349 ~ 63051560 (+)
G169711 NA non-coding downstream 57142 63095099 ~ 63150059 (+)
G169130 NA other upstream 251012 62785358 ~ 62785643 (+)
LOC118936783 LOC106560954 other upstream 1156231 61870393 ~ 61880657 (+)
G167609 LOC106560954 other upstream 1309201 61726959 ~ 61727454 (+)
LOC110510683 LOC106560954 other upstream 1504328 61525283 ~ 61535728 (+)
G167325 LOC106561003 other upstream 1804110 61232196 ~ 61232545 (+)
G170131 NA other downstream 782504 63820461 ~ 63830320 (+)
G170150 LOC106560975 other downstream 835291 63873248 ~ 63878233 (+)
map1lc3b map1lc3b other downstream 2493189 65531126 ~ 65536787 (+)
jph3 jph3 other downstream 2555560 65593468 ~ 65648660 (+)
G172639 NA other downstream 2897639 65935596 ~ 65936133 (+)

Expression


Co-expression Network