G171136 (LOC106560972)


Basic Information

Item Value
gene id G171136
gene name LOC106560972
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 64084388 ~ 64085551 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU194690
CACCTTTACTATTCCCCTGGCCACCACTCTGATGTCCAGTATCTCCCGTACATTCATTCCTAAAGTGGAGTACAGTGTGTCCTATCTCTCTATAGGCTGTGTATTGTTGGTACTTACCAGACACTGGCACTGCTGGCAGTTCTCCACCCAGGACTCTCCACTGCCGTAGGTCAGCAGGCCGTTCTGGTGCAGACACTGGCTGCTGAGGCGAGGGTCACACTCTGGACAGCAGAACAGGTCAGCTGTGGGGttctcacagtcacacaccatcCTCCTGCACATCACCTGGCCAGTcTGACAGGAGCAGACGGAGCACCTATCGTTGTCCAGCACCCAGATCTGCCTGTTGtgtttgactttgttgtcaaGGATACAGTCTCCAGTGCAGTTCCTCCCGTGGGGGCACCTGCAGTCATAGCCCCCCTCCAAGTTGAAGCACACTGTGTCATTGGCACAGGTGTTCCTCTCCATCTTGCATTCGTTGATATCTGTAGGGAGCAAGAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU194690 True 504 lncRNA 0.41 2 64084388 64085551

Neighbor

gene id symbol gene type direction distance location
LOC110501774 NA coding downstream 113064 63968729 ~ 63971324 (-)
LOC110501772 LOC106560973 coding downstream 120419 63958607 ~ 63963969 (-)
nuak1b LOC106560975 coding downstream 180270 63873240 ~ 63904118 (-)
appl2 LOC106560977 coding downstream 322975 63745050 ~ 63761413 (-)
LOC118941165 NA coding downstream 366221 63717837 ~ 63718167 (-)
tmem117 LOC106573612 coding upstream 16505 64102056 ~ 64170220 (-)
LOC110493646 irak4 coding upstream 94730 64180281 ~ 64188853 (-)
tesmin LOC106560967 coding upstream 304600 64390151 ~ 64400478 (-)
LOC110493697 LOC106561117 coding upstream 320509 64406060 ~ 64410316 (-)
ppp6r3 NA coding upstream 365751 64451302 ~ 64469833 (-)
G171118 NA non-coding downstream 73255 64004272 ~ 64011133 (-)
G170356 NA non-coding downstream 180310 63509607 ~ 63904078 (-)
G170625 NA non-coding downstream 224525 63859632 ~ 63859863 (-)
G170573 NA non-coding downstream 340102 63741903 ~ 63744286 (-)
G170520 NA non-coding downstream 349038 63733310 ~ 63735350 (-)
G171265 NA non-coding upstream 116361 64201912 ~ 64202219 (-)
G171279 NA non-coding upstream 135823 64221374 ~ 64222667 (-)
G171378 NA non-coding upstream 293456 64379007 ~ 64381802 (-)
G171357 NA non-coding upstream 302607 64388158 ~ 64389035 (-)
G171416 NA non-coding upstream 385045 64470596 ~ 64471072 (-)
LOC110493507 LOC106560984 other downstream 933537 63146769 ~ 63224837 (-)
G168141 NA other downstream 2568732 61515237 ~ 61515656 (-)
G168078 NA other downstream 2592717 61490434 ~ 61491671 (-)
LOC110493186 mlkl other downstream 2784296 61290149 ~ 61303507 (-)
G172141 NA other upstream 1000021 65085572 ~ 65086188 (-)
G173121 NA other upstream 1297886 65383437 ~ 65383873 (-)
zcchc14 zcchc14 other upstream 1448920 65530911 ~ 65571025 (-)
G173370 LOC106560927 other upstream 1747790 65833341 ~ 65839074 (-)

Expression


Co-expression Network