G170981


Basic Information

Item Value
gene id G170981
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 64451428 ~ 64455336 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU194519
GTTTTTCACCTTGGGTTTGTACAGTTTAATGTTGTCAAGGGGGAGAAAACATGTGTATGGCACTAACAGAACATTATCTACCTTAATAAATTAAGTTAAAAACTATACCAAAGGTTTTCAAATCTTGCTCATGTTGAAAGTATACAAGAAACATTTACAAATAATAGCTGTGGCAAAATAAACCTTTGAATATTTAAAATTATTTTGATTCCTACCAACAAGCGTACTGATAAACATACCAACATGGGTTGCCGATTAACATTGCATGGTAGCTGGAAATAAAATGTATCCGATTTTGTGCAGAAGGAAAACCCTATCAAAATCACACCAAGTTTTCCAATTGGTATATTTTAGTTATCGTCCGTTTCTGTATACATTTTCTttttataaaatattttattCATACAATCATTTTAACTATAGCAACATTACTATTTAACTTGGAGTGGCAAAATATCAGACGGATCACCTCATAACAATAGTATATAAACGAATGCAAAAAAATAATAACTGTATCCATTAGAGTATCTCTTCATTCAGTTCCAACTTCCTGTACAACTGTCTGTAATAGCCTAATATTAATATTGCTGGTCCTGATCTGGTGAAGTTAGTGCAGCAGCAGCTCTGACTCTGGACTTGCACTGCCCTCTACTGGTGGCCCAGGGAGAGAGCTGTGCGTGGCAGGAACAGGCTGGCAGGAACCACATCACCCTGGGCCGTTCACAGCTGCCGCCGGTGAGGCCacgCTCTTCTCTGGTGTTCCACTCTCCCTCACCACGCACTTTGCAGATGCGTCCTCTGAGGTAGACAACTTCACATCCTCATCTTGAAAATGGCAGTTTCAGTTTTGGCATCTACAGTAAGGCTAACTGTTTCCTTCATGGATCCATTGGTGACCGTCTCAGTGGTGACGGACTCCTCTGCATCCGAGCATCCGGCTTTCCCTCCAGGGgagctggctggctgggctgCCTCATCCCCTGGCCACTGGTCAGAATCTTCATGCTGCATTGGTGCGTTGACACCCAAGGGGTCTCCTGTCTCTATACAGGTCTCCATTGCTACTGGGGAATTGC
>TU194520
GTTTTTCACCTTGGGTTTGTACAGTTTAATGTTGTCAAGGGGGAGAAAACATGTGTATGGCACTAACAGAACATTATCTACCTTAATAAATTAAGTTAAAAACTATACCAAAGGTTTTCAAATCTTGCTCATGTTGAAAGTATACAAGAAACATTTACAAATAATAGCTGTGGCAAAATAAACCTTTGAATATTTAAAATTATTTTGATTCCTACCAACAAGCGTACTGATAAACATACCAACATGGGTTGCCGATTAACATTGCATGGTAGCTGGAAATAAAATGTATCCGATTTTGTGCAGAAGGAAAACCCTATCAAAATCACACCAAGTTTTCCAATTGGTATATTTTAGTTATCGTCCGTTTCTGTATACATTTTCTttttataaaatattttattCATACAATCATTTTAACTATAGCAACATTACTATTTAACTTGGAGTGGCAAAATATCAGACGGATCACCTCATAACAATAGTATATAAACGAATGCAAAAAAATAATAACTGTATCCATTAGAGTATCTCTTCATTCAGTTCCAACTTCCTGTACAACTGTCTGTAATAGCCTAATATTAATATTGCTGGTCCTGATCTGGTGAAGTTAGTGCAGCAGCAGCTCTGACTCTGGACTTGCACTGCCCTCTACTGGTGGCCCAGGGAGAGAGCTGTGCGTGGCAGGAACAGGCTGGCAGGAACCACATCACCCTGGGCCGTTCACAGCTGCCGCCGGTGAGGCCacgCTCTTCTCTGGTGTTCCACTCTCCCTCACCACGCACTTTGCAGATGCGTCCTCTGAGGTAGACAACTTCACATCCTCACTGCAGAGAAAAAGGGAACATTTACAGAGCTCTTGCCATTTCAAACATTCAGAATGACAATAGA

Function

NR:

description
serine/threonine-protein phosphatase 6 regulatory subunit 3-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU194519 False 1076 lncRNA 0.47 4 64451428 64455336
TU194520 True 888 lncRNA 0.53 2 64451428 64452703

Neighbor

gene id symbol gene type direction distance location
LOC110501781 LOC106560965 coding upstream 5528 64428834 ~ 64445900 (+)
LOC118936791 LOC106560965 coding upstream 22706 64427891 ~ 64428722 (+)
LOC110493690 NA coding upstream 45024 64404119 ~ 64406404 (+)
LOC110493669 LOC106560968 coding upstream 72065 64250758 ~ 64379363 (+)
LOC110493658 LOC106560970 coding upstream 271225 64169264 ~ 64180203 (+)
anpepb LOC106560949 coding downstream 115519 64570855 ~ 64598616 (+)
akap13 LOC106560961 coding downstream 210799 64666135 ~ 64759393 (+)
LOC110493825 LOC106560959 coding downstream 410948 64866284 ~ 65024865 (+)
map1lc3b map1lc3b coding downstream 1075790 65531126 ~ 65536787 (+)
jph3 jph3 coding downstream 1138132 65593468 ~ 65648660 (+)
G170961 LOC106560967 non-coding upstream 48012 64402476 ~ 64403416 (+)
G170953 NA non-coding upstream 56387 64391140 ~ 64395041 (+)
G170865 NA non-coding upstream 70253 64379995 ~ 64381175 (+)
G170751 NA non-coding upstream 307307 64066489 ~ 64144121 (+)
G170774 NA non-coding upstream 347317 64102087 ~ 64104111 (+)
G170992 NA non-coding downstream 19966 64475302 ~ 64475998 (+)
G171032 NA non-coding downstream 73764 64529100 ~ 64552688 (+)
G171472 NA non-coding downstream 111292 64566628 ~ 64567245 (+)
G171483 NA non-coding downstream 145026 64600362 ~ 64600578 (+)
G171495 NA non-coding downstream 166391 64621727 ~ 64621942 (+)
G170150 LOC106560975 other upstream 573195 63873248 ~ 63878233 (+)
G170131 NA other upstream 621108 63820461 ~ 63830320 (+)
G169130 NA other upstream 1665785 62785358 ~ 62785643 (+)
LOC118936783 LOC106560954 other upstream 2571004 61870393 ~ 61880657 (+)
G167609 LOC106560954 other upstream 2723974 61726959 ~ 61727454 (+)
G172639 NA other downstream 1480260 65935596 ~ 65936133 (+)
LOC110494096 LOC106561115 other downstream 1807290 66262594 ~ 66266024 (+)
G173938 LOC106573687 other downstream 2286484 66741820 ~ 66742213 (+)

Expression


Co-expression Network