G171472


Basic Information

Item Value
gene id G171472
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 64566628 ~ 64567245 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU195054
ctctctcggccATTTTGCCATGCCACTGAAAGCCACTAATGTCGGCAGGTTTCCCTGGCGTCTGTCTCCCACCCGTTCAGCACCGGAGGGCTATCGGTGACGTCACCGAGCAGAGTCTCAGACAGGGCACATTCCAGGACAGGGAACTGTACAGATctggatatttatttttttatttcacctttatttaaccaggtaggctagttgagaacaagttctcatttacaactgcgacctggccaagataaagcatagcagtgtgaacagacaacaacacagagttacacatggagtaaacaataaacaagtcaataacacagtagaaaaataaaaaaggagtctatatacattgtgtgcaaaaggcatgaggaggtaggcaaataattacaatttagtagattaacactggagtgaaatgatcaaatggtcatgtgcaggtagagatactggtgtgcaaaagagcagaaaagtaaataaataaaaacagtatggggatgaggtaggtaaattgggtgggctatttaccgatggactatgtacagctgcagcgatcggttagctgctcagatagtagatgtttaaagttggtgagggagataaaagtctccagaCATAGAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU195054 True 618 lncRNA 0.43 1 64566628 64567245

Neighbor

gene id symbol gene type direction distance location
LOC110501781 LOC106560965 coding upstream 120728 64428834 ~ 64445900 (+)
LOC118936791 LOC106560965 coding upstream 137906 64427891 ~ 64428722 (+)
LOC110493690 NA coding upstream 160224 64404119 ~ 64406404 (+)
LOC110493669 LOC106560968 coding upstream 187265 64250758 ~ 64379363 (+)
LOC110493658 LOC106560970 coding upstream 386425 64169264 ~ 64180203 (+)
anpepb LOC106560949 coding downstream 3610 64570855 ~ 64598616 (+)
akap13 LOC106560961 coding downstream 98890 64666135 ~ 64759393 (+)
LOC110493825 LOC106560959 coding downstream 299039 64866284 ~ 65024865 (+)
map1lc3b map1lc3b coding downstream 963881 65531126 ~ 65536787 (+)
jph3 jph3 coding downstream 1026223 65593468 ~ 65648660 (+)
G171032 NA non-coding upstream 13940 64529100 ~ 64552688 (+)
G170992 NA non-coding upstream 90630 64475302 ~ 64475998 (+)
G170981 NA non-coding upstream 111292 64451428 ~ 64455336 (+)
G170961 LOC106560967 non-coding upstream 163212 64402476 ~ 64403416 (+)
G170953 NA non-coding upstream 171587 64391140 ~ 64395041 (+)
G171483 NA non-coding downstream 33117 64600362 ~ 64600578 (+)
G171495 NA non-coding downstream 54482 64621727 ~ 64621942 (+)
G171543 NA non-coding downstream 127470 64694715 ~ 64695004 (+)
G171596 NA non-coding downstream 260725 64827970 ~ 64828215 (+)
G171608 NA non-coding downstream 274778 64842023 ~ 64842304 (+)
G170150 LOC106560975 other upstream 688395 63873248 ~ 63878233 (+)
G170131 NA other upstream 736308 63820461 ~ 63830320 (+)
G169130 NA other upstream 1780985 62785358 ~ 62785643 (+)
LOC118936783 LOC106560954 other upstream 2686204 61870393 ~ 61880657 (+)
G167609 LOC106560954 other upstream 2839174 61726959 ~ 61727454 (+)
G172639 NA other downstream 1368351 65935596 ~ 65936133 (+)
LOC110494096 LOC106561115 other downstream 1695381 66262594 ~ 66266024 (+)
G173938 LOC106573687 other downstream 2174575 66741820 ~ 66742213 (+)

Expression


Co-expression Network