G171596


Basic Information

Item Value
gene id G171596
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 64827970 ~ 64828215 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU195231
caatacacagaggtatacatttttaaacctgcatatttagctaaaagaaatccaggttagcaggcaatattaaccaggtgaaattctGTCATTTCTCtgtcattgcacgcagagtcagggtatatgcaacagtttgggcaacctggctcattgcaaactaatttgccagaattttacgtaattatgacataacattgaaggttgtgcaatgtaacaagaatatttagacttagggatgccaccgtt

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU195231 True 246 lncRNA 0.53 1 64827970 64828215

Neighbor

gene id symbol gene type direction distance location
akap13 LOC106560961 coding upstream 68577 64666135 ~ 64759393 (+)
anpepb LOC106560949 coding upstream 229354 64570855 ~ 64598616 (+)
LOC110501781 LOC106560965 coding upstream 382070 64428834 ~ 64445900 (+)
LOC118936791 LOC106560965 coding upstream 399248 64427891 ~ 64428722 (+)
LOC110493690 NA coding upstream 421566 64404119 ~ 64406404 (+)
LOC110493825 LOC106560959 coding downstream 38069 64866284 ~ 65024865 (+)
map1lc3b map1lc3b coding downstream 702911 65531126 ~ 65536787 (+)
jph3 jph3 coding downstream 765253 65593468 ~ 65648660 (+)
lcat LOC106560930 coding downstream 964374 65792589 ~ 65801972 (+)
pla2g15 lypa3 coding downstream 984015 65812230 ~ 65821040 (+)
G171543 NA non-coding upstream 132966 64694715 ~ 64695004 (+)
G171495 NA non-coding upstream 206028 64621727 ~ 64621942 (+)
G171483 NA non-coding upstream 227392 64600362 ~ 64600578 (+)
G171472 NA non-coding upstream 260725 64566628 ~ 64567245 (+)
G171032 NA non-coding upstream 275282 64529100 ~ 64552688 (+)
G171608 NA non-coding downstream 13808 64842023 ~ 64842304 (+)
G171609 NA non-coding downstream 14549 64842764 ~ 64901949 (+)
G172147 NA non-coding downstream 276369 65104584 ~ 65105782 (+)
G172350 NA non-coding downstream 608777 65436992 ~ 65438383 (+)
G172379 NA non-coding downstream 647095 65475310 ~ 65475518 (+)
G170150 LOC106560975 other upstream 949737 63873248 ~ 63878233 (+)
G170131 NA other upstream 997650 63820461 ~ 63830320 (+)
G169130 NA other upstream 2042327 62785358 ~ 62785643 (+)
LOC118936783 LOC106560954 other upstream 2947546 61870393 ~ 61880657 (+)
G167609 LOC106560954 other upstream 3100516 61726959 ~ 61727454 (+)
G172639 NA other downstream 1107381 65935596 ~ 65936133 (+)
LOC110494096 LOC106561115 other downstream 1434411 66262594 ~ 66266024 (+)
G173938 LOC106573687 other downstream 1913605 66741820 ~ 66742213 (+)

Expression


Co-expression Network