G172937


Basic Information

Item Value
gene id G172937
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 65104540 ~ 65105721 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU196691
ACATGTCCAGACACAGACAGCATCTCGTCTCATTCAAACACCATGGCACAGCCTCACTGATTCCAGCATTGCTTTATTCTCCAAAAAAGCAGAGTAGCAGACCCAGTCAGTctgtccagtcagtcagtctgtccagcCACTTCCGGTGTACATCTGCTGGGGGACCTGCTCTGCCAGTCTAGGTGCCACCCCATCAGGGATGGGCCAACCTCTAGAGGGGAGGCAGTAGCTGGAGGGCAGAGGAGGACAGTACAGTCCGACTAAGAGAGATGTGACAGGACTCACAATTTCCCATGAACAATATGACAAATCACACTTCAGATAAATGTTGGTGGGAGATAAATGTATTACAGTGTTGTGTTTTTCATTTACACAATGCATTGTATTTCGGGTTGTAGAAATACATAATAGAGGAAGTATAACGTTTTCATAGTTCTGGCAGTGCATCACGGAGGTAACCCAACCATTGGGATACAATTATTGGTATTGATCAAAGTTGGATCTCCACTTGATGAAACAAACGATATCAGATACATTGTGCAAAGGAGGAAAAAAACAATACATATTATGCTATCCATGCAGCAGGGTTTCTACACTGCTATACACACCAACACTTTTCAATAGCTTCTGGATCTTAACAATATTCTTCTCTTCCAGTAAATATTTCCTATGAAATGCAATATTTTAATGTCTGAAGCAGATGTCCGTTGCCATAACTACTGTATAAGAGTGTTGTTCCCTGTACATCTATTTCTCCACCTGGGATTAACTGAAGAGCTGTGACTGGAGGAATTGAGTCAAGCGTTTATGgaaatgtctctctgtctctgtgtgacgAGTACTTAGTGTTTTCATTTTCATCAAGCTATGTACGGTTGAAGTAATAACTTTGTGACgccctctgacatcatcagtaaTGTATTTTTCGCCTGAAAAAAAAGTGCTGATACGGCTATTTCTCTTgagtatttctctctctgtctctcagtgtgtCCAACCCTTGTTAGAGTGACGAAGGAACAAGGTGTGACGTTCACTCATGGTCCCTCTGATTGTAAAACATCTTTTCTCCATAGTGTTCTCTTTACCTATCCATCTATACACTAAAAACAGCTGTAATTAAGTAGCTATGTATCCAACAATGATTTATGTAGAACTATTCTATAAATAAATTGAAAACCA

Function

NR:

description
PREDICTED: neutral and basic amino acid transport protein rBAT

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU196691 True 1182 lncRNA 0.37 1 65104540 65105721

Neighbor

gene id symbol gene type direction distance location
LOC110493816 LOC106560960 coding downstream 256472 64802877 ~ 64848068 (-)
LOC118937287 NA coding downstream 325501 64777758 ~ 64779039 (-)
sv2bb LOC100380683 coding downstream 442026 64622371 ~ 64662514 (-)
mespbb LOC106561116 coding downstream 484557 64618549 ~ 64619983 (-)
mespab LOC106560948 coding downstream 502464 64600914 ~ 64602076 (-)
ntrk3a LOC106560958 coding upstream 5553 65111274 ~ 65365999 (-)
det1 LOC106560940 coding upstream 381666 65487387 ~ 65509066 (-)
zcchc14 zcchc14 coding upstream 429558 65530911 ~ 65571025 (-)
klhdc4 klhdc4 coding upstream 545358 65651079 ~ 65665571 (-)
slc7a5 slc7a5 coding upstream 579540 65685261 ~ 65715957 (-)
G172929 NA non-coding downstream 10781 65093518 ~ 65093759 (-)
G172129 NA non-coding downstream 27986 65076289 ~ 65076554 (-)
G172119 NA non-coding downstream 34746 65069414 ~ 65069794 (-)
G172118 NA non-coding downstream 35653 65068594 ~ 65068887 (-)
G171907 NA non-coding downstream 329004 64775291 ~ 64775536 (-)
G172938 NA non-coding upstream 4908 65110629 ~ 65111152 (-)
G173123 NA non-coding upstream 279753 65385474 ~ 65386709 (-)
G173134 NA non-coding upstream 301282 65407003 ~ 65407350 (-)
G173191 NA non-coding upstream 371500 65477221 ~ 65478048 (-)
G172141 NA other downstream 18352 65085572 ~ 65086188 (-)
tmem117 LOC106573612 other downstream 936142 64102056 ~ 64170220 (-)
LOC110501772 LOC106560973 other downstream 1140719 63958607 ~ 63963969 (-)
LOC110493507 LOC106560984 other downstream 1953689 63146769 ~ 63224837 (-)
G168141 NA other downstream 3588884 61515237 ~ 61515656 (-)
G173121 NA other upstream 277716 65383437 ~ 65383873 (-)
G173370 LOC106560927 other upstream 727620 65833341 ~ 65839074 (-)
G173431 NA other upstream 816129 65921850 ~ 65922229 (-)
LOC110494122 LOC106560915 other upstream 1172100 66277821 ~ 66299637 (-)

Expression


Co-expression Network