G172147


Basic Information

Item Value
gene id G172147
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 65104584 ~ 65105782 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU195803
TGGATACATAGCTACTTAATTACAGCTGTTTTTAGTGTATAGATGGATAGGTAAAGAGAACACTATGGAGAAAAGATGTTTTACAATCAGAGGGACCATGAGTGAACGTCACACCTTGTTCCTTCGTCACTCTAACAAGGGTTGGacacactgagagacagagagagaaatactcAAGAGAAATAGCCGTATCAGCACTTTTTTTTCAGGCGAAAAATACAttactgatgatgtcagagggcGTCACAAAGTTATTACTTCAACCGTACATAGCTTGATGAAAATGAAAACACTAAGTACTcgtcacacagagacagagagacatttcCATAAACGCTTGACTCAATTCCTCCAGTCACAGCTCTTCAGTTAATCCCAGGTGGAGAAATAGATGTACAGGGAACAACACTCTTATACAGTAGTTATGGCAACGGACATCTGCTTCAGACATTAAAATATTGCATTTCATAGGAAATATTTACTGGAAGAGAAGAATATTGTTAAGATCCAGAAGCTATTGAAAAGTGTTGGTGTGTATAGCAGTGTAGAAACCCTGCTGCATGGATAGCATAATATGTATTGTTTTTTTCCTCCTTTGCACAATGTATCTGATATCGTTTGTTTCATCAAGTGGAGATCCAACTTTGATCAATACCAATAATTGTATCCCAATGGTTGGGTTACCTCCGTGATGCACTGCCAGAACTATGAAAACGTTATACTTCCTCTATTATGTATTTCTACAACCCGAAATACAATGCATTGTGTAAATGAAAAACACAACACTGTAATACATTTATCTCCCACCAACATTTATCTGAAGTGTGATTTGTCATATTGTTCATGGGAAATTGTGAGTCCTGTCACATCTCTCTTAGTCGGACTGTACTGTCCTCCTCTGCCCTCCAGCTACTGCCTCCCCTCTAGAGGTTGGCCCATCCCTGATGGGGTGGCACCTAGACTGGCAGAGCAGGTCCCCCAGCAGATGTACACCGGAAGTGgctggacagactgactgactggacagACTGACTGGGTCTGCTACTCTGCTTTTTTGGAGAATAAAGCAATGCTGGAATCAGTGAGGCTGTGCCATGGTGTTTGAATGAGACGAGATGCTGTCTGTGTCTGGACATGTCCTGATGCTCACAACCTCTCTGACATGTTTAGTCGGGCTTCAAAGCAGCGAGCTCTGTGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU195803 True 1199 lncRNA 0.52 1 65104584 65105782

Neighbor

gene id symbol gene type direction distance location
LOC110493825 LOC106560959 coding upstream 79719 64866284 ~ 65024865 (+)
akap13 LOC106560961 coding upstream 345191 64666135 ~ 64759393 (+)
anpepb LOC106560949 coding upstream 505968 64570855 ~ 64598616 (+)
LOC110501781 LOC106560965 coding upstream 658684 64428834 ~ 64445900 (+)
LOC118936791 LOC106560965 coding upstream 675862 64427891 ~ 64428722 (+)
map1lc3b map1lc3b coding downstream 425344 65531126 ~ 65536787 (+)
jph3 jph3 coding downstream 487686 65593468 ~ 65648660 (+)
lcat LOC106560930 coding downstream 686807 65792589 ~ 65801972 (+)
pla2g15 lypa3 coding downstream 706448 65812230 ~ 65821040 (+)
znf319b LOC106560927 coding downstream 724333 65830115 ~ 65839097 (+)
G171609 NA non-coding upstream 202635 64842764 ~ 64901949 (+)
G171608 NA non-coding upstream 262280 64842023 ~ 64842304 (+)
G171596 NA non-coding upstream 276369 64827970 ~ 64828215 (+)
G171543 NA non-coding upstream 409580 64694715 ~ 64695004 (+)
G171495 NA non-coding upstream 482642 64621727 ~ 64621942 (+)
G172350 NA non-coding downstream 331210 65436992 ~ 65438383 (+)
G172379 NA non-coding downstream 369528 65475310 ~ 65475518 (+)
G172385 NA non-coding downstream 375941 65481723 ~ 65482142 (+)
G172386 NA non-coding downstream 376410 65482192 ~ 65482461 (+)
G172387 NA non-coding downstream 376839 65482621 ~ 65483071 (+)
G170150 LOC106560975 other upstream 1226351 63873248 ~ 63878233 (+)
G170131 NA other upstream 1274264 63820461 ~ 63830320 (+)
G169130 NA other upstream 2318941 62785358 ~ 62785643 (+)
LOC118936783 LOC106560954 other upstream 3224160 61870393 ~ 61880657 (+)
G167609 LOC106560954 other upstream 3377130 61726959 ~ 61727454 (+)
G172639 NA other downstream 829814 65935596 ~ 65936133 (+)
LOC110494096 LOC106561115 other downstream 1156844 66262594 ~ 66266024 (+)
G173938 LOC106573687 other downstream 1636038 66741820 ~ 66742213 (+)

Expression


Co-expression Network