G173123



Basic Information


Item Value
gene id G173123
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 65385474 ~ 65386709 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU196877
cctaatattgagttgcaccgccTTTTTccgtcagaacagcctcaattcattggggcatggactcttcaaggtgtcgaaagcgttccacaggaatgctggcccatgttaactccattgcttcccacagttgtgtcaagttggctagacgTAATTTGGCTGGTGggcaattcttgatacacacgggaaactgttgagcatgaaaaactcagcagcattgccgttcttgacacactcaaacagttgcgcctggcatctactaccattctattaggctggactctcagtccagcctctcttatGGTCAAActggttgatcacatgatcaacaaatTTTGCCCTAATCTCATTAGAGatgcctctccttccttctcttctttgccctcgtcctcttcctctccctcctactcctcttgctctctgtccattgttggcatccattgttcaaaacaggtaatctgacctttgacctatttataggcctatactacagtaaagcagtgattggttagtgatcagttacagttttttccaactgcttacacacaaaatcttttcatgtcacacgattttttaaacctctcactcaaagtgcaaaactacacaccaaatgtgcaaaaccataagctatttctcagcctttgactcagttgtcaattgcataaaacacttttttcaaaatactacacacaattctcaacctaaaacacaaaaatctaacaggaagtgacttgctttccttttccaaacacaaccaatcaaaatgctacacttattcaccaggtcacacacacactcctcacatgtgcaaacactaatagcttacagttttttccaactgcttacccactttttcaaaactgtctcctttttttcaaatctctacacacaattcccaaaactgcacacacaaaatgcaaaatgcctcacatctccaCATCAAAATGTacaaacactgcattcaaaatgacataaacacatgtcagaatgaagcatttgcatcaaacgacaaacactgctttcataaaaggacatttttggatataccatgtaaacactgttgttctaaatctaaagctctttggtctttcataggcttatatctacatttcaatacaatgttctacagtgaaagtaatctgctgagaggggtaacaagtacactgtaaacaccaatgcaatgtagaaacagaaaatatttattaggccaaacattactgttgtatacagtagcataca

Function


NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU196877 True 1236 lncRNA 0.48 1 65385474 65386709

Neighbor


gene id symbol gene type direction distance location
ntrk3a LOC106560958 coding downstream 19475 65111274 ~ 65365999 (-)
LOC110493816 LOC106560960 coding downstream 537406 64802877 ~ 64848068 (-)
LOC118937287 NA coding downstream 606435 64777758 ~ 64779039 (-)
sv2bb LOC100380683 coding downstream 722960 64622371 ~ 64662514 (-)
mespbb LOC106561116 coding downstream 765491 64618549 ~ 64619983 (-)
det1 LOC106560940 coding upstream 100678 65487387 ~ 65509066 (-)
zcchc14 zcchc14 coding upstream 148570 65530911 ~ 65571025 (-)
klhdc4 klhdc4 coding upstream 264370 65651079 ~ 65665571 (-)
slc7a5 slc7a5 coding upstream 298552 65685261 ~ 65715957 (-)
LOC110493906 ca5a coding upstream 344022 65730731 ~ 65752045 (-)
G172938 NA non-coding downstream 274322 65110629 ~ 65111152 (-)
G172937 NA non-coding downstream 279753 65104540 ~ 65105721 (-)
G172929 NA non-coding downstream 291715 65093518 ~ 65093759 (-)
G172129 NA non-coding downstream 308920 65076289 ~ 65076554 (-)
G172119 NA non-coding downstream 315680 65069414 ~ 65069794 (-)
G173134 NA non-coding upstream 20294 65407003 ~ 65407350 (-)
G173191 NA non-coding upstream 90512 65477221 ~ 65478048 (-)
G173214 NA non-coding upstream 137713 65524422 ~ 65525128 (-)
G173121 NA other downstream 1601 65383437 ~ 65383873 (-)
G172141 NA other downstream 299286 65085572 ~ 65086188 (-)
tmem117 LOC106573612 other downstream 1217076 64102056 ~ 64170220 (-)
LOC110501772 LOC106560973 other downstream 1421653 63958607 ~ 63963969 (-)
LOC110493507 LOC106560984 other downstream 2234623 63146769 ~ 63224837 (-)
G173370 LOC106560927 other upstream 446632 65833341 ~ 65839074 (-)
G173431 NA other upstream 535141 65921850 ~ 65922229 (-)
LOC110494122 LOC106560915 other upstream 891112 66277821 ~ 66299637 (-)
G173675 NA other upstream 948703 66335412 ~ 66338386 (-)

Expression



Co-expression Network