G172388


Basic Information

Item Value
gene id G172388
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 65483075 ~ 65484436 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU196050
ttttggTTCCGTTTTTCTGCAGTATCATTATGACTGAATTATATGAGAAAggagatacactacatggccaaaaatatgtggacacctgctcatcaaacatctaattccaaaatcatgggcattaatatggagttggtcccccctttgctgctataacagcctccactcttctgggaaaaatgtccactagatgttggaacattgctgcagggacttgcttccgttcagccacaacagcattagtgaggttggacaTTAATGTTGGGCGATTAGCACTGGCTAATcgctgaggtcagggctctgtgcaggccagtcaagttcttctgcAACgacctcgacaaaccatttctgtatagacctcgctttgtgcatgggggcattgtcatgcgtaaacaggaaagggccttccccaaactgttgccacaaagttgtaaatacaaaattgtctagaatgtcattgtatgctgtagcattaagatttcccttcactggaactaaggggcctagcccaaaccatgaaaaacagccccagaccattattcctcctccaccaaactttacagttggcactagcattcaggcaggtagcattctcctttTACCCGTCAAAGCCAGATTCGTCCCTCGGACTGCTAGagagtgaagcgtgattcatcactccagagaaagcatttctactgctccagagtccaatggcagcgagcttcacaccactccagccaacactttgcattgctcatggtgatcttatTCTTGTGTGTGGCTCCTCGGCCATGGaatcccatttcatgaagctcccaaagaACAGTTCtgactgacgttgcttccagaggcagcttGGAACTCGGGAGTGAGTGTCGCAACCAAAGACAGACTATTGGCAGtagcactcggtggtcctgttctgtgagcttgagtGCCCTACCATTTTGCGGtcgagctgttgttgctcctagacgtttccaattCACATTTCCAATACAGTTGACCGGAGCTGCTCCAGCATGGCAGAaatgtgacgaactgacttgttggaaaggtggcatcctatgacgatgccagGTTgatagtcactgagctcttcagtacgggcttTTCTACTGCTAATGtctgtctatgaagattgcatggctgtgtgctcgattttatacacttgtcagcaacatgtggctaaaatagccgaatcccctcatttgaagggctgtccacatacttttgattaTGTAGTGTACATGTACACAGACATCCTCCCACTCCCACAGAAAGTTACAGTCAGATCACACCTCTTATTCCACTGCTCAGCCGAGACTGTTCACTCCACATTTCCTACAGGCAGAGAATCCCAAGAATGGCGAATCCAAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU196050 True 1362 lncRNA 0.47 1 65483075 65484436

Neighbor

gene id symbol gene type direction distance location
LOC110493825 LOC106560959 coding upstream 458210 64866284 ~ 65024865 (+)
akap13 LOC106560961 coding upstream 723682 64666135 ~ 64759393 (+)
anpepb LOC106560949 coding upstream 884459 64570855 ~ 64598616 (+)
LOC110501781 LOC106560965 coding upstream 1037175 64428834 ~ 64445900 (+)
LOC118936791 LOC106560965 coding upstream 1054353 64427891 ~ 64428722 (+)
map1lc3b map1lc3b coding downstream 46690 65531126 ~ 65536787 (+)
jph3 jph3 coding downstream 109032 65593468 ~ 65648660 (+)
lcat LOC106560930 coding downstream 308153 65792589 ~ 65801972 (+)
pla2g15 lypa3 coding downstream 327794 65812230 ~ 65821040 (+)
znf319b LOC106560927 coding downstream 345679 65830115 ~ 65839097 (+)
G172387 NA non-coding upstream 4 65482621 ~ 65483071 (+)
G172386 NA non-coding upstream 614 65482192 ~ 65482461 (+)
G172385 NA non-coding upstream 933 65481723 ~ 65482142 (+)
G172379 NA non-coding upstream 7557 65475310 ~ 65475518 (+)
G172350 NA non-coding upstream 44692 65436992 ~ 65438383 (+)
G172389 NA non-coding downstream 3603 65488039 ~ 65488869 (+)
G172472 NA non-coding downstream 129786 65614222 ~ 65618491 (+)
G172473 NA non-coding downstream 131301 65615737 ~ 65617761 (+)
G172495 NA non-coding downstream 177404 65661840 ~ 65662637 (+)
G172499 NA non-coding downstream 184081 65668517 ~ 65668744 (+)
G170150 LOC106560975 other upstream 1604842 63873248 ~ 63878233 (+)
G170131 NA other upstream 1652755 63820461 ~ 63830320 (+)
G169130 NA other upstream 2697432 62785358 ~ 62785643 (+)
LOC118936783 LOC106560954 other upstream 3602651 61870393 ~ 61880657 (+)
G167609 LOC106560954 other upstream 3755621 61726959 ~ 61727454 (+)
G172639 NA other downstream 451160 65935596 ~ 65936133 (+)
LOC110494096 LOC106561115 other downstream 778190 66262594 ~ 66266024 (+)
G173938 LOC106573687 other downstream 1257384 66741820 ~ 66742213 (+)

Expression


Co-expression Network