G173201 (jph3)


Basic Information

Item Value
gene id G173201
gene name jph3
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 65608539 ~ 65620372 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU196972
gacctgctgctagtaaaATCTACTATTAAGGCCTACACATAGACCTGCTGCTAGTAAGGCCaactagtaaggcctacacatggacctgctgctagtaacatctagtAgtaaggccTACACAtagacctgctgctagtaacatctactagtaagGCCTACACATAGACCTGCTACTAGTAAGGCCTACACATGGACCTGCTACTAGTAAGGCCAACTAGTAAGGCCTACACATGCACCTGCTGCTAGTAAGGCCTACTAGTAAGGCCTACACAAGGACCTGCTGCTAATAAGGCCTACTAGTAAGGCCTACACATGGACCTGCTCCAAATAAGGCCTACTAGTGATTTACACCTTCCACTTAAGTCCGCCCTTTTCCGCACAGTTGTCCACATCCTCATCAGGGCAACTCCCTTGAAAAGTGTTCTGTGGTCGCAGAGATTTAGGGACTGGACGTACGAATTGGATCATTTAATTTGAGTTGACCAAGAGGACAGCAAAGAAGCGGAAGGTGTAAATTATGGACCTGCTGCTGGGTCTTACCTGGACATGGCGATCTCAGCCTTCTGATTGGCGATGTCCGCAGCCTTTTCGGCCGTGTCCACAGCCCGGTCCACCTTCTCTCTGATCTTACTGGCTCGGAGGGGGATTAGGTTCTTCCTTTTGCCGCTCACCAGGACGTTCTGCTTGTACTTGCCCTCCTCCTTGGTCCCGTCAGGGAAGGTGGTGCAGCCGTACCCGTGCCGCTTGTTTCCCACCCACTCACCCTCATAGTGCAGGCCGTCCGAGCGCCGGCTCACCCCACAGCCCGTGCGCTTGTCGTTCTTCCACTCGCCGCAGTAGGTCTCCGTTGCCGTGGCGTCCACATCGTCCTCGGCGACGGCCAGCTCGGCTTCGCCCTCTCCCAGGCTGATGGTGGAGTTGATGTCAGAGTTTACCGAGCTTACCGTGCTCATGCCCGCCTCACTGCGGAACGAGCTCTGCTTGGAGCGCTGGCTGGCCAGGGAGCTCTTGGACTCTGACTTCCTCAGTTTGAGTCCGCTGAGGATGGAGCGACCTCGGAACAGACCCTTTTTCTTGCCCTTCAGCAGCTCTGCCTCGCTGTGAGCAGTGAGCACGAAGCCCCCCCGCGACACTGCC

Function

symbol description
jph3 Predicted to be involved in regulation of synaptic plasticity. Predicted to act upstream of or within several processes, including learning; neuromuscular process controlling balance; and regulation of neuronal synaptic plasticity. Predicted to be located in endoplasmic reticulum. Predicted to be part of junctional membrane complex. Predicted to be active in endoplasmic reticulum membrane and plasma membrane. Implicated in Huntington's disease-like 2.

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU196972 True 1137 lncRNA 0.39 4 65608539 65620372

Neighbor

gene id symbol gene type direction distance location
zcchc14 zcchc14 coding downstream 37514 65530911 ~ 65571025 (-)
det1 LOC106560940 coding downstream 99473 65487387 ~ 65509066 (-)
ntrk3a LOC106560958 coding downstream 242540 65111274 ~ 65365999 (-)
LOC110493816 LOC106560960 coding downstream 760471 64802877 ~ 64848068 (-)
LOC118937287 NA coding downstream 829500 64777758 ~ 64779039 (-)
klhdc4 klhdc4 coding upstream 30707 65651079 ~ 65665571 (-)
slc7a5 slc7a5 coding upstream 64889 65685261 ~ 65715957 (-)
LOC110493906 ca5a coding upstream 110359 65730731 ~ 65752045 (-)
LOC110493917 LOC106560931 coding upstream 142349 65762721 ~ 65778516 (-)
ccdc135 drc7 coding upstream 161958 65782330 ~ 65792797 (-)
G173239 NA non-coding downstream 33224 65574375 ~ 65575315 (-)
G173214 NA non-coding downstream 83411 65524422 ~ 65525128 (-)
G173191 NA non-coding downstream 130491 65477221 ~ 65478048 (-)
G173293 NA non-coding upstream 34260 65654632 ~ 65658304 (-)
G173297 NA non-coding upstream 41480 65661852 ~ 65662637 (-)
G173309 NA non-coding upstream 73412 65693784 ~ 65694028 (-)
G173326 NA non-coding upstream 101749 65722121 ~ 65722321 (-)
G173328 NA non-coding upstream 103587 65723959 ~ 65724172 (-)
G173121 NA other downstream 224666 65383437 ~ 65383873 (-)
G172141 NA other downstream 522351 65085572 ~ 65086188 (-)
tmem117 LOC106573612 other downstream 1440141 64102056 ~ 64170220 (-)
LOC110501772 LOC106560973 other downstream 1644718 63958607 ~ 63963969 (-)
G173370 LOC106560927 other upstream 212969 65833341 ~ 65839074 (-)
G173431 NA other upstream 301478 65921850 ~ 65922229 (-)
LOC110494122 LOC106560915 other upstream 657449 66277821 ~ 66299637 (-)
G173675 NA other upstream 715040 66335412 ~ 66338386 (-)
G173696 LOC106560906 other upstream 754854 66375226 ~ 66390766 (-)

Expression


Co-expression Network