G172472


Basic Information

Item Value
gene id G172472
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 65614222 ~ 65618491 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU196150
agtagatgttactagcagcaggtccatgtgtagaccttactagtagatgttactagcaacatgtccatgtgtagaccttactagtagattTTACTAGCAGCAGGTCTATGTGTAGGCTTTAATAGTAGATtttactagcagcaggtccatgtgtagaccttactagtagatgttactagcagcaggtatATGTGTAGGTCTTattagtagatgttactagcagcaggtccatgtgtagaccttactagtagatgttactagcagcaggtctaTGTGTAGGCCTTAATAGTAGATtttactagcagcaggtccatgtgtagaccttactagtagatgttactagcagcaggtccatgtgtagaccttactagtagatgttactagcagcaggtccatgtgtagaccttactagtagatgttactagcagcaggtctaTGTGTAggccttactagtagatgttactagtagatgttactagcagcaggtccatgtgtagaccttactagtagatgttactagcagcaggtatATGTGTAGGCCTTattagtagatgttactagcagcaggtccatgtgtagaccttactagtagatgttactagcagcaggtccatgtgtagaccttactagtagatgttactagcagcatgtccatgtgtagaccttactagcagatgttactagcagcaggtccatgtgtagaccttactagtagatgttactagcagcaggtccatgtgtagaccttactagtagatgttactagcagcaggtccatgtgtagaccttactagtagatgttactagcagcaggtccatgtgtagaccttactagtagatgttacttgCAGCatgtccatgtgtagaccttactagtagatgttgcTAGCAGtaggtccatgtgtagaccttactagtagatgttactagcagcaggtccatgtgtagaccttactagtagatgttactagcaacatgtccatgtgtagaccttactagtagattTTACTAGCAGCAGGTCTATGTGTAGGCTTTAATAGTAGATtttactagcagcaggtccatgtgtagaccttactagtagatgttactagcagcaggtatATGTGTAGGCCTTattagtagatgttactagcagcaggtccatgtgtagaccttactagtagatgttactagcagcaggtctaTGTGTAGGCCTTAATAGTAGATtttactagcagcaggtccatgtgtagacc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU196150 True 1238 lncRNA 0.40 2 65614222 65618491

Neighbor

gene id symbol gene type direction distance location
map1lc3b map1lc3b coding upstream 77440 65531126 ~ 65536787 (+)
LOC110493825 LOC106560959 coding upstream 589357 64866284 ~ 65024865 (+)
akap13 LOC106560961 coding upstream 854829 64666135 ~ 64759393 (+)
anpepb LOC106560949 coding upstream 1015606 64570855 ~ 64598616 (+)
LOC110501781 LOC106560965 coding upstream 1168322 64428834 ~ 64445900 (+)
lcat LOC106560930 coding downstream 174098 65792589 ~ 65801972 (+)
pla2g15 lypa3 coding downstream 193739 65812230 ~ 65821040 (+)
znf319b LOC106560927 coding downstream 211624 65830115 ~ 65839097 (+)
LOC110493986 csnk2a2 coding downstream 234014 65852505 ~ 65865705 (+)
LOC110493994 fa2h coding downstream 266302 65884793 ~ 65917366 (+)
G172389 NA non-coding upstream 125353 65488039 ~ 65488869 (+)
G172388 NA non-coding upstream 129786 65483075 ~ 65484436 (+)
G172387 NA non-coding upstream 131151 65482621 ~ 65483071 (+)
G172386 NA non-coding upstream 131761 65482192 ~ 65482461 (+)
G172385 NA non-coding upstream 132080 65481723 ~ 65482142 (+)
G172495 NA non-coding downstream 43349 65661840 ~ 65662637 (+)
G172499 NA non-coding downstream 50026 65668517 ~ 65668744 (+)
G172500 NA non-coding downstream 50559 65669050 ~ 65669695 (+)
G172508 NA non-coding downstream 63388 65681879 ~ 65682936 (+)
G172509 NA non-coding downstream 64871 65683362 ~ 65683572 (+)
G170150 LOC106560975 other upstream 1735989 63873248 ~ 63878233 (+)
G170131 NA other upstream 1783902 63820461 ~ 63830320 (+)
G169130 NA other upstream 2828579 62785358 ~ 62785643 (+)
LOC118936783 LOC106560954 other upstream 3733798 61870393 ~ 61880657 (+)
G172639 NA other downstream 317105 65935596 ~ 65936133 (+)
LOC110494096 LOC106561115 other downstream 644135 66262594 ~ 66266024 (+)
G173938 LOC106573687 other downstream 1123329 66741820 ~ 66742213 (+)
LOC110494451 zfpm1 other downstream 1337033 66900017 ~ 66995521 (+)
LOC110494472 utp4 other downstream 1620399 67232278 ~ 67239902 (+)

Expression


Co-expression Network