G172495


Basic Information

Item Value
gene id G172495
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 65661840 ~ 65662637 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU196177
ctcccgggtggcgcagtggttaagggcgctgtactgcagcgccagctgtgccatcagagccctgggttcgcgcccaggctctgtcgtaaccggccgcgaccgggaggtccgtggggcgacgcacaattggcctagcgtcgcccaggttagggagggcttggtcagtAGCACCAGCGAgggcttgtctcatcgcgcaccagcgactcctgtggcgggctgggcgcagtgtacgctagccaaggtggccaggtgcacggtgtttcctccggcgcattggtgcggctggcttccgggttggatgtgcgctgtgttaaagaagcagcggcttggttggttgtgtatcggaggacgcatgactttcaaccttcgtctctcccgagcccgtacgggagttgtagcgatgagacaagatagtagctactacaacaattggatactacaaaattggggagaaaaagggg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU196177 True 461 lncRNA 0.61 2 65661840 65662637

Neighbor

gene id symbol gene type direction distance location
jph3 jph3 coding upstream 13180 65593468 ~ 65648660 (+)
map1lc3b map1lc3b coding upstream 125058 65531126 ~ 65536787 (+)
LOC110493825 LOC106560959 coding upstream 636975 64866284 ~ 65024865 (+)
akap13 LOC106560961 coding upstream 902447 64666135 ~ 64759393 (+)
anpepb LOC106560949 coding upstream 1063224 64570855 ~ 64598616 (+)
lcat LOC106560930 coding downstream 129952 65792589 ~ 65801972 (+)
pla2g15 lypa3 coding downstream 149593 65812230 ~ 65821040 (+)
znf319b LOC106560927 coding downstream 167478 65830115 ~ 65839097 (+)
LOC110493986 csnk2a2 coding downstream 189868 65852505 ~ 65865705 (+)
LOC110493994 fa2h coding downstream 222156 65884793 ~ 65917366 (+)
G172472 NA non-coding upstream 43349 65614222 ~ 65618491 (+)
G172473 NA non-coding upstream 44079 65615737 ~ 65617761 (+)
G172389 NA non-coding upstream 172971 65488039 ~ 65488869 (+)
G172388 NA non-coding upstream 177404 65483075 ~ 65484436 (+)
G172387 NA non-coding upstream 178769 65482621 ~ 65483071 (+)
G172499 NA non-coding downstream 5880 65668517 ~ 65668744 (+)
G172500 NA non-coding downstream 6413 65669050 ~ 65669695 (+)
G172508 NA non-coding downstream 19242 65681879 ~ 65682936 (+)
G172509 NA non-coding downstream 20725 65683362 ~ 65683572 (+)
G172510 NA non-coding downstream 21465 65684102 ~ 65684494 (+)
G170150 LOC106560975 other upstream 1783607 63873248 ~ 63878233 (+)
G170131 NA other upstream 1831520 63820461 ~ 63830320 (+)
G169130 NA other upstream 2876197 62785358 ~ 62785643 (+)
G172639 NA other downstream 272959 65935596 ~ 65936133 (+)
LOC110494096 LOC106561115 other downstream 599989 66262594 ~ 66266024 (+)
G173938 LOC106573687 other downstream 1079183 66741820 ~ 66742213 (+)
LOC110494451 zfpm1 other downstream 1292887 66900017 ~ 66995521 (+)
LOC110494472 utp4 other downstream 1576253 67232278 ~ 67239902 (+)

Expression


Co-expression Network