G172525


Basic Information

Item Value
gene id G172525
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 65730812 ~ 65734428 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU196213
TCAGAAGAAGAGGTCCACAGGCCTTCATAAGAatgacattttacatttacattttagtaatttagtagACACCTTTATCAAAAGCGATTTACAGTAAGTGCATTAAActgaagatagctaggtgagacaaccacatcacaGTCACAGTACATTGTTCCTCAATACAGAAGTTATAGAGCAGATTCAGTGCTAATAGGAAAAGACAAGTGTACGCCTtttaaagggaaaggggggatacctagtcagatgtcCAACTAAATCTAttcaattgaaatgtgtcttccgcatttaggCGGATAAAACTGAGATGTCTTTAAGATGCTCTTTGACGAGGTAGGGTTTCAGTTGTTTTCGGAAGATGGGAacggactctgctgtcctagcttcagtgGGTGGATTCAGTGGCCAACTATAATAAACAGATGAGGGTCTGTTTGAATCAGGTTGAGATAAAACTCAAACCATGTTTCCTAACATATCTAAATATCCACACCCTGGCTCCATTCTCTGTTTTGTCTTCAAAGGTGCCGACTAGGTCTGGTGTGGGGTTATGGGTCCTGGAACCAGGTCCTTATTGCCTGCCCAGGCCTAGGCTCCTGTCGAATGGGGAACAATGCACAGCACAACCATTCATTTATAGGGGACCTTTCTAACAACCCAGATCATTGTGACATCATGGTTGTTGCTACTGCAGATTTTACTGGGTTCTGGCTGCTGAGCATTACTCAAGTAGAGACCAGCATGTCCCATAACAGACTTAACTACATCACTTTCCCCAGATGAACACCACATTCCATATAAGCATTTTAATACCACCAGCAAGTCAAAATACTATACAAATACTAAAACACAGTGTACTCATTTCTTTAATATATTCATCTTTAAAATCTTCTATATGAACATTTGTCAGCAGTGGCTTCCTGGTTGTACGGCTGGACTGGGCTAATCAAGCACCTGGTACAACATGCCTGTTGGGAGAGGGGCCCCAATCTAGCCCTTGAACCACAGACCCTCAATAGCAGTTTTCCTTCCGGCCCATGGGGCAGGAATGTGGCCACCCATTGATAAAAGAAATACAACATTTACGACATCACAACAAACGTAGAACACTCCTCTAGCTCCAGGAAAACACCTGCTACGTAGCAAACAAAGCAAGGGGAAGCACTGTCAAGTTTCCATCTGAGgtgttttacccaaaaggctcAGAATTGTGGGCCATGACTCCAGCGGACCTGCTCTGACTTGGGCCCAATACCAGGCCACAGGAAGCTGGCAtttataccgaacaaaaatataaacacaacatataaagtgttagtttcatgagctgaaataaaagatcctagaaatgttccatacgcacaaaaagcataCTTCTCTCATATtttgagcacaaatttgtttatattcctgttagtgaacatttctcatttgccaagataatccatccatctgacaggtgtggcatatcaagaagctgattaaacagcatgatctttacaaaggtgcaccttgtgctagggaaaataaaaggtcactctaaaatgtgcagttgtgtcacaatgccacagatgtctcaagtttttagggagcgtgctattggcatgctgactgcaggaatgtccaccagcgctgttaccagagaatttaatgttaatttctctaccatgagccacctccaacataatttttgaaaatttggcagtatgcccaaccggcctcacaaccatgtgtaaccaggacctccacatccggcttcttcacctgtgggatcatctgagggggtgctgaggagtatttcggTCTGTTATGTCAATTGAcctatttccttatatgaactgtaactcagtaaaattgttgaaaatgttcagtttagatttttgttcagcacacataacaatggctaactgtgaacACCTCACAAAGAAACTGTCTtgatgcagaggttgttgatCCTGCTCACCCCAAGTCTTTAGTGTCACACTCCTGATGGAAACAATGATACTAGAGCTTACATCAACATAAAAACACTGGCAACACAATGGTGTAGGGCAAGTTAAGTGGAAGTTCCGCATAAGTCCCATTTATGTAAAACATGTACATCGATCTGGATCATTGTGTATGCTAAGTTTGACACGTTTAAAAGAGTCACTGGTGGCATATACATGAAAATACAGCAGTTCATCATTGATGACAGATTAATCAAGACTAATGATCATGATTTAAAGTACAGTCATTACAGTTAAATCACATTCCAGTTACCATTTAGTATttataatttgaaaacaaaaataCAGTTAAGTGAAAGGAAACATCCCACTGGAGATTAAAAAGGCAGAACATAACTAAACAGACCAGGACAAATAGGGGGCAGAAAATAGGTCCCTTACCACAGTTACAGCAAAAAAAAGTGAATCTCTGTCCTACCATCACTTACCCATAAAAATGCCCACATCAAACCAACACCTAAAATGCACAACTGTTTCGTAACCCCATTCAAATCCTCCCTGTACCCAAACATTGTTCCCCTAACCCGTAGTGTGAAAAGGGGTCACCTTCAATTTCATAGGTAACGCAGTGAAACAGGCATAAGTGTCAAGTAGGTATGGAGGGCTGGAGTCTTGAACAGTGCTTTTCAGTTTTCAGAACATGTTATTGTCAAGCTACTTCTCTGCAATTGACCTATTGGGGAGAGGGCCAGGCCGTACAGAGAACAGTTTGTACAGGGACATTGTTattgaaatatatatacacacacacacacacacacacacacaaaagacaaCCGTCCTCTCACTTAATGCTTTATAGAACAATACCAAAGCTCCCTCTGTGACTGCTCTCCCTTTCATTCCCTGTTCATAGAACAAACCAATCAACCATTTTCTCCTCCAATCTTTTTAGCACCCACGTCAAAGCTCTTCCTTCACTGTCTCTGAACATTgcacatacagtgagctccaaaagtattgggacagtgacaatttgttgttgttttggctctgtactccagcactttggatttgaaatgatacaatgactaggAGGTTACCTTTAATTTGATAGTATTGTCATCCATATCTGGTGAACGgtttagaaatgacagcacttTTTGTATACCCCCCCAATTTTAGGCGactaaaagtattgggacaaattcacatgTGTACTAAACTAGTAATTGGTCCCATAGTCATAGCACGTAATGAATACATCAAGCTCGTGACTACACATttcttggatgcatttgctgtttgttttagttgtttcatttttttttgccGATTAGAAATAAATGGTAAttcattgtgtcattttggagtcacttattgtaaataaaaatataatatgtttctaaacacttctacattcatgtggatgctaccacaATTATGTATAAtactgaatgaatcgtgaataatgatgagcgAGAAAGTTA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU196213 True 3439 lncRNA 0.40 2 65730812 65734428

Neighbor

gene id symbol gene type direction distance location
jph3 jph3 coding upstream 82152 65593468 ~ 65648660 (+)
map1lc3b map1lc3b coding upstream 194030 65531126 ~ 65536787 (+)
LOC110493825 LOC106560959 coding upstream 705947 64866284 ~ 65024865 (+)
akap13 LOC106560961 coding upstream 971419 64666135 ~ 64759393 (+)
anpepb LOC106560949 coding upstream 1132196 64570855 ~ 64598616 (+)
lcat LOC106560930 coding downstream 58161 65792589 ~ 65801972 (+)
pla2g15 lypa3 coding downstream 77802 65812230 ~ 65821040 (+)
znf319b LOC106560927 coding downstream 95687 65830115 ~ 65839097 (+)
LOC110493986 csnk2a2 coding downstream 118077 65852505 ~ 65865705 (+)
LOC110493994 fa2h coding downstream 150365 65884793 ~ 65917366 (+)
G172536 NA non-coding upstream 12147 65718453 ~ 65718665 (+)
G172535 NA non-coding upstream 12519 65717922 ~ 65718293 (+)
G172531 NA non-coding upstream 18374 65711596 ~ 65712438 (+)
G172510 NA non-coding upstream 46318 65684102 ~ 65684494 (+)
G172509 NA non-coding upstream 47240 65683362 ~ 65683572 (+)
G172581 NA non-coding downstream 105874 65840302 ~ 65840526 (+)
G172582 NA non-coding downstream 107820 65842248 ~ 65845537 (+)
G172583 NA non-coding downstream 112569 65846997 ~ 65847232 (+)
G172586 NA non-coding downstream 114525 65848953 ~ 65849166 (+)
G172592 NA non-coding downstream 134901 65869329 ~ 65870268 (+)
G170150 LOC106560975 other upstream 1852579 63873248 ~ 63878233 (+)
G170131 NA other upstream 1900492 63820461 ~ 63830320 (+)
G169130 NA other upstream 2945169 62785358 ~ 62785643 (+)
G172639 NA other downstream 201168 65935596 ~ 65936133 (+)
LOC110494096 LOC106561115 other downstream 528198 66262594 ~ 66266024 (+)
G173938 LOC106573687 other downstream 1007392 66741820 ~ 66742213 (+)
LOC110494451 zfpm1 other downstream 1221096 66900017 ~ 66995521 (+)
LOC110494472 utp4 other downstream 1504462 67232278 ~ 67239902 (+)

Expression


Co-expression Network