G173619


Basic Information

Item Value
gene id G173619
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 66254806 ~ 66256962 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU197446
AATAAGCTTAAAAAAAGAGAGCCAATTCCCTGCCACATCACTCAGATAACGAGGCTACCCCAAAGCAGCATTCCCCACAAAATGATTTTTACAAAACCATCAGTGACCATCAGTTATTATAGAGAACAAAATCAAAAGAATAGCAATGTGATGCATTATCTGTGGAGAGACTAGAAGCCATGGAGCATCATCATAACACTTTACAGCAGTCCCCCTGCCTGCCCCTTGACCCCCCCAGTCCCTGACTCAAAAACAGGCCCAACCGCGGAGAGGCTGAGGGACTGGAGAGTCAGACCAGCACAAGGGAGATGTTATCTCTATGAGTTTGTGAACTAAACCAGGGAACTGCAGCATCCTAAATATGGAACAGATCAATGCAAGATGGACCATGTACTGTATTAAAAAAGCACAAATATAAAccctaccaatactactactactaatactactaataataagaATAATAAAGAGGCTTTAGAGCGTATAAAAGCAGCCAGGTGATAGTAGATGAGTAGAAACGCCAGGTgggcatacatacagtacatacatacagtacatacatacagtacatacatattaAAGTACAGAGATATTCTGACCGACCAGGATCCCTCCATGACCTGAAACAAGTAAGCAGGTGTGTAAACTTTTGCCTCTGCTGTGGCCACAACCAGGAATAAGATCTATAAATACTGCACCATGCTAAAGTGGGACATGGGGTCGTCACATATCCCAAAGCCAGTTCTGCACACATACGCACATCCCTTATCATCCTGTGATACAGCCAGCAATAGCAACAGTGTCAATAAGAACAGGTGAGAGAGTAAAAAGGTGTTGTCACAAATGAGGCAGGCATCAGTGCCAATGGTGTCTGTGTATGTAATGagtatgcaggtgtgtgtgtttgtgggttttGGCAGGGTGGCATTTCATGCAGACTCATTGCATTGGCAGCATTTGAGATTGCATTATCAGGGGAACATGCTTATTGCCCTGGAGACCAGGCTTTCAACCCAAACAGTCTGTGATTAAAATTCTTATTGAGGGATTGCATCTGATATCCTCACTACACTCCCCatgcagaacccccccccccgctcCCCCACCCAGGCCCTCCTAACTAAGTTCCTCTTATCTAATCATATCACGTGTTCCTCACTGCTCAGCTCTGCATAACAACCAAACAACCACTGAAACATGAGATGCCAGTCAGATTGGCCCCGAAAAGATAGATCCCTTTCAGATGTTATTTTTCATACAATACCTCATTATAAATTTAAAGTATTAAATGTGGGTGTTTCAACTCCCTACAAAGATGGTACGTTGACCATAGAAACCATTAGAAAGAGTTAGAAAAAAAGACATTATGCCGAGGTTCCATGAATTGGGGTTAAGGTAAGAGAGgaacaaacacaccaacacagagacacagtaagcCAGGCTACACTCTAAATTCCATGAGTCAAGAGAAGTCTCATGTCACCGTTTTAAATCAAATAAAGAACAACGTTTAGACGCTTCCGAGCCCAAAAGGTAAAAACAGAAAAAGGTCAGACATAAATGAGGCCTAAAAACATAAAAGTATCTAAATACAGGAAATGAGTCATAGTAAGTCAATCATTGTGACTCCATCATCAGGGAGCTGATAGACCCCGAGGACCAGAGGTGATACATGGTACGGTGTGTGAGTCAacctcagactgtgtgtgtttgtgtgagtcttTGGCTCAGTCCCTCAGGTCCGCATTGGGCCCGGTCCAGACCTCTGGCACACACAACAACcactctcttatctctctccaccaggttcTCTCTGAATCACATGACTCCTCTGCATCTGCTCCTTTATTTCTTCTTCGTTATGTCCACCCGTTTCTTTTCCTTTTTCAAGCTCTGTCTTTCTCAGGCCTGAGTTCCTTGCCTTCCCTCTGCCTCTTCGGTCCCCGTTCTTCCTCCGTGGCAGTATAAAGGGTGTAGGCCTaaggctcctcctctcctgtggaCACAGCCAGACGCATGGCCACAGACAGGTGGTCAGTGAGGCCGGCCAGCTGGGTGATGAAGCTAAACTCTTC
>TU197448
gaaaatatatattttttttaaagcagaagAAAATAAGCTGTTGAATAAGCTTAAAAAAAGAGAGCCAATTCCCTGCCACATCACTCAGATAACGAGGCTACCCCAAAGCAGCATTCCCCACAAAATGATTTTTACAAAACCATCAGTGACCATCAGTTATTATAGAGAACAAAATCAAAAGAATAGCAATGTGATGCATTATCTGTGGAGAGACTAGAAGCCATGGAGCATCATCATAACACTTTACAGCAGTCCCCCTGCCTGCCCCTTGACCCCCCCAGTCCCTGACTCAAAAACAGGCCCAACCGCGGAGAGGCTGAGGGACTGGAGAGTCAGACCAGCACAAGGGAGATGTTATCTCTATGAGTTTGTGAACTAAACCAGGGAACTGCAGCATCCTAAATATGGAACAGATCAATGCAAGATGGACCATGTACTGTATTAAAAAAGCACAAATATAAAccctaccaatactactactactaatactactaataataagaATAATAAAGAGGCTTTAGAGCGTATAAAAGCAGCCAGGTGATAGTAGATGAGTAGAAACGCCAGGTgggcatacatacagtacatacatacagtacatacatattaAAGTACAGAGATATTCTGACCGACCAGGATCCCTCCATGACCTGAAACAAGTAAGCAGGTGTGTAAACTTTTGCCTCTGCTGTGGCCACAACCAGGAATAAGATCTATAAATACTGCACCATGCTAAAGTGGGACATGGGGTCGTCACATATCCCAAAGCCAGTTCTGCACACATACGCACATCCCTTATCATCCTGTGATACAGCCAGCAATAGCAACAGTGTCAATAAGAACAGGTGAGAGAGTAAAAAGGTGTTGTCACAAATGAGGCAGGCATCAGTGCCAATGGTGTCTGTGTATGTAATGagtatgcaggtgtgtgtgtttgtgggttttGGCAGGGTGGCATTTCATGCAGACTCATTGCATTGGCAGCATTTGAGATTGCATTATCAGGGGAACATGCTTATTGCCCTGGAGACCAGGCTTTCAACCCAAACAGTCTGTGATTAAAATTCTTATTGAGGGATTGCATCTGATATCCTCACTACACTCCCCatgcagaacccccccccccgctcCCCCACCCAGGCCCTCCTAACTAAGTTCCTCTTATCTAATCATATCACGTGTTCCTCACTGCTCAGCTCTGCATAACAACCAAACAACCACTGAAACATGAGATGCCAGTCAGATTGGCCCCGAAAAGATAGATCCCTTTCAGATGTTATTTTTCATACAATACCTCATTATAAATTTAAAGTATTAAATGTGGGTGTTTCAACTCCCTACAAAGATGGTACGTTGACCATAGAAACCATTAGAAAGAGTTAGAAAAAAAGACATTATGCCGAGGTTCCATGAATTGGGGTTAAGGTAAGAGAGgaacaaacacaccaacacagagacacagtaagcCAGGCTACACTCTAAATTCCATGAGTCAAGAGAAGTCTCATGTCACCGTTTTAAATCAAATAAAGAACAACGTTTAGACGCTTCCGAGCCCAAAAGGTAAAAACAGAAAAAGGTCAGACATAAATGAGGCCTAAAAACATAAAAGTATCTAAATACAGGAAATGAGTCATAGTAAGTCAATCATTGTGACTCCATCATCAGGGAGCTGATAGACCCCGAGGACCAGAGGTGATACATGGTACGGTGTGTGAGTCAacctcagactgtgtgtgtttgtgtgagtcttTGGCTCAGTCCCTCAGGTCCGCATTGGGCCCGGTCCAGACCTCTGGCACACACAACAACcactctcttatctctctccaccaggttcTCTCTGAATCACATGACTCCTCTGCATCTGCTCCTTTATTTCTTCTTCGTTATGTCCACCCGTTTCTTTTCCTTTTTCAAGCTCTGTCTTTCTCAGGCCTGAGTTCCTTGCCTTCCCTCTGCCTCTTCGGTCCCCGTTCTTCCTCCGTGGCAGTATAAAGGGTGTAGGCCTaaggctcctcctctcctgtggaCACAGCCAGACGCATGGCCACAGACAGGTGGTCAGTGAGGCCGGCCAGCTGGGTGATGAAGCTAAACTCTTC

Function

NR:

description
PREDICTED: sphingomyelin phosphodiesterase 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU197446 False 2075 lncRNA 0.38 2 66254806 66256919
TU197448 True 2105 lncRNA 0.42 2 66254806 66256962

Neighbor

gene id symbol gene type direction distance location
si:dkeyp-50b9.1 LOC106560918 coding downstream 31456 66210436 ~ 66223350 (-)
LOC110494064 NA coding downstream 108537 66144846 ~ 66146269 (-)
znrf1 znrf1 coding downstream 136093 66084226 ~ 66118713 (-)
snrkb LOC106560921 coding downstream 184824 66032023 ~ 66069982 (-)
usb1 usb1 coding downstream 425066 65821657 ~ 65829740 (-)
LOC110494122 LOC106560915 coding upstream 41226 66277821 ~ 66299637 (-)
LOC110494195 LOC106560909 coding upstream 86668 66343630 ~ 66354538 (-)
LOC110494316 NA coding upstream 325158 66582120 ~ 66586583 (-)
LOC110494333 LOC106560895 coding upstream 372597 66629559 ~ 66633818 (-)
LOC110533844 NA coding upstream 380191 66637153 ~ 66638202 (-)
G173570 NA non-coding downstream 64040 66187646 ~ 66190766 (-)
G173577 NA non-coding downstream 105806 66145604 ~ 66149000 (-)
G173569 NA non-coding downstream 113003 66141603 ~ 66141803 (-)
G173488 NA non-coding downstream 225106 65999375 ~ 66029700 (-)
G173636 NA non-coding upstream 1725 66258687 ~ 66258901 (-)
G173651 NA non-coding upstream 43541 66300503 ~ 66300721 (-)
G173676 NA non-coding upstream 76951 66333913 ~ 66334944 (-)
G173679 NA non-coding upstream 85135 66342097 ~ 66342307 (-)
G173431 NA other downstream 332577 65921850 ~ 65922229 (-)
G173370 LOC106560927 other downstream 415732 65833341 ~ 65839074 (-)
zcchc14 zcchc14 other downstream 718025 65530911 ~ 65571025 (-)
G173121 NA other downstream 870933 65383437 ~ 65383873 (-)
G172141 NA other downstream 1168618 65085572 ~ 65086188 (-)
G173675 NA other upstream 78450 66335412 ~ 66338386 (-)
G173696 LOC106560906 other upstream 118264 66375226 ~ 66390766 (-)
G174505 NA other upstream 435446 66692408 ~ 66692850 (-)
G177487 NA other upstream 3334173 69591135 ~ 69591722 (-)

Expression


Co-expression Network