G173805


Basic Information

Item Value
gene id G173805
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 66530452 ~ 66530710 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU197657
acttttactcaagtatattttactgggtgactttcacttgagtcattttctcttaaggtatctttactttgactcaagtatgacaatttggtacATTTTTCATGGCTACTATTACCCCATCCATTTGAATAATTACCGCTATGCACATGCATTTTTATGACAATTAACATGTTTTTACAACCAGGCACATATTCTATGTGTAGTAGTAAACATgtccatacagtgcattcggaaagtattcagacaccttgaatttttc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU197657 True 259 lncRNA 0.45 1 66530452 66530710

Neighbor

gene id symbol gene type direction distance location
LOC110494260 LOC106560901 coding upstream 891 66508242 ~ 66529561 (+)
LOC110494252 LOC106560900 coding upstream 22462 66496959 ~ 66507990 (+)
LOC110494247 LOC106560903 coding upstream 35370 66473806 ~ 66495082 (+)
adat1 adat1 coding upstream 69575 66434480 ~ 66460877 (+)
LOC110494212 LOC106560906 coding upstream 108115 66375132 ~ 66422337 (+)
LOC110494278 chmp1a coding downstream 7245 66537955 ~ 66547328 (+)
LOC110494286 LOC106560898 coding downstream 18835 66549545 ~ 66552357 (+)
LOC110494295 fanca coding downstream 24837 66555547 ~ 66581651 (+)
vps9d1 LOC106560896 coding downstream 55689 66586399 ~ 66611590 (+)
LOC110494358 LOC106560893 coding downstream 126134 66656844 ~ 66665610 (+)
G173804 NA non-coding upstream 114 66530115 ~ 66530338 (+)
LOC110494202 polr2c non-coding upstream 166982 66359803 ~ 66363985 (+)
LOC110494008 LOC106560923 non-coding upstream 530888 65975745 ~ 66031253 (+)
G172658 NA non-coding upstream 559494 65965873 ~ 65970958 (+)
G172637 NA non-coding upstream 600773 65929364 ~ 65929679 (+)
G173806 NA non-coding downstream 956 66531666 ~ 66531887 (+)
G173808 NA non-coding downstream 2748 66533458 ~ 66533659 (+)
G173835 NA non-coding downstream 4504 66535214 ~ 66535447 (+)
G173843 NA non-coding downstream 81934 66612644 ~ 66614161 (+)
G173844 NA non-coding downstream 83663 66614373 ~ 66615201 (+)
LOC110494096 LOC106561115 other upstream 264429 66262594 ~ 66266024 (+)
G172639 NA other upstream 594319 65935596 ~ 65936133 (+)
jph3 jph3 other upstream 889476 65593468 ~ 65648660 (+)
map1lc3b map1lc3b other upstream 993665 65531126 ~ 65536787 (+)
G170150 LOC106560975 other upstream 2652219 63873248 ~ 63878233 (+)
G173938 LOC106573687 other downstream 211110 66741820 ~ 66742213 (+)
LOC110494451 zfpm1 other downstream 424814 66900017 ~ 66995521 (+)
LOC110494472 utp4 other downstream 708180 67232278 ~ 67239902 (+)
hsbp1b LOC106561110 other downstream 955453 67486128 ~ 67488205 (+)
G176612 LOC100846954 other downstream 2330128 68860838 ~ 68861368 (+)

Expression


Co-expression Network