G174428 (chmp1a)


Basic Information

Item Value
gene id G174428
gene name chmp1a
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 66537902 ~ 66545441 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU198338
TCGCCTTGTCATCATCACATTTCCTTATTTTAGAAAACAAGCCAAATGTCACACAGTAACCAGTTAAAGCAGCAGTGAAAGCTGGATTGTTAGTGTACCTGCGGGACAGCTGGTCCTCCTTCTCGTGCTGTGAGCGTGACGAGCTCTCTCCCAGTGAGGTGGCACCTGCAGGCACCTGGCTGAGCTGGTCCATCACCTCCAGACCACCCTCCTCTGCTATCTGGAGGATGAGGTCATCCACCTGGTCTTGGGGCGTGGTCAGCGTGGTGGCCGAGCTCATCGAGTCCTCCATCACAGAGGTGTGAACATCCAGGTTCTGGACCTGTGTCTCAAACTTGTCCATGACAGCAGACACCTTCTGCAGGTCCATGGAACCCAGTGCCTTGTCGAGTGCCTTGGTGACCTGCGTCATATTCTTTGTGACCGCCTTCATAGCGACTGCAGTCTGGACCTTGGAGGCTACAGCATCAACTCGAGATGCCATGCGCAACCAATTAAGGCCCTCGTTCTTCTTACGGATGGCATTCTCTGCATACACTCTGGCAACGTCCACATTCTTCAACTGAAGAGCCTTTAACTTTGGCTTGCTCAGATTTTGAATCCTTCTCTGCCTTTTTGGCAAGTTTCTCAAGCTGTTTTGCTGTAAACTTCAGTTGGAAGAGTGTGTCATCCATGTCCGCATGTATTTGAGTTCCACTTCacctaaaaaaaaatgttttactttgcaAATGAGCTAATTGCCCTATTGTATAGATGTCCGTGTATGACGACACTCTTCCTGGTTCAGAACGGATCACGTGAGATAGGCGTTTCTGTTGCTGAAGCCAAATAGGAATAGGCCATTATTGGCAGTCACATGACATGATGTTGATTTGTT

Function

symbol description
chmp1a Acts upstream of or within cerebellum development. Predicted to be located in endosome; membrane; and nuclear matrix. Predicted to be part of ESCRT III complex. Predicted to be active in multivesicular body. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia type 8. Orthologous to human CHMP1A (charged multivesicular body protein 1A).

NR:

description
charged multivesicular body protein 1a-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU198338 True 877 lncRNA 0.49 6 66537902 66545441

Neighbor

gene id symbol gene type direction distance location
LOC110494195 LOC106560909 coding downstream 183364 66343630 ~ 66354538 (-)
LOC110494122 LOC106560915 coding downstream 238265 66277821 ~ 66299637 (-)
si:dkeyp-50b9.1 LOC106560918 coding downstream 314552 66210436 ~ 66223350 (-)
LOC110494064 NA coding downstream 391633 66144846 ~ 66146269 (-)
znrf1 znrf1 coding downstream 419189 66084226 ~ 66118713 (-)
LOC110494316 NA coding upstream 36679 66582120 ~ 66586583 (-)
LOC110494333 LOC106560895 coding upstream 84118 66629559 ~ 66633818 (-)
LOC110533844 NA coding upstream 91712 66637153 ~ 66638202 (-)
LOC110494342 LOC106560894 coding upstream 95621 66641062 ~ 66643589 (-)
LOC110494363 klhl36 coding upstream 122433 66667874 ~ 66678769 (-)
G173832 NA non-coding downstream 7892 66529809 ~ 66530010 (-)
G173810 NA non-coding downstream 41412 66496118 ~ 66496490 (-)
G173725 NA non-coding downstream 110712 66426908 ~ 66427190 (-)
G173693 NA non-coding downstream 115578 66421641 ~ 66422324 (-)
G173695 NA non-coding downstream 121512 66415276 ~ 66416390 (-)
G174434 NA non-coding upstream 679 66546120 ~ 66547318 (-)
G174435 NA non-coding upstream 6453 66551894 ~ 66552356 (-)
G174436 NA non-coding upstream 7617 66553058 ~ 66553386 (-)
G174437 NA non-coding upstream 8114 66553555 ~ 66553912 (-)
G174447 NA non-coding upstream 76134 66621575 ~ 66622004 (-)
G173696 LOC106560906 other downstream 147136 66375226 ~ 66390766 (-)
G173675 NA other downstream 199516 66335412 ~ 66338386 (-)
G173431 NA other downstream 615673 65921850 ~ 65922229 (-)
G173370 LOC106560927 other downstream 698828 65833341 ~ 65839074 (-)
G174505 NA other upstream 146967 66692408 ~ 66692850 (-)
G177487 NA other upstream 3045694 69591135 ~ 69591722 (-)
LOC110494902 LOC106560839 other upstream 3148168 69648833 ~ 69767366 (-)
LOC110501848 NA other upstream 4015081 70552263 ~ 70642587 (-)
fam169b fam169b other upstream 4223717 70769140 ~ 70773282 (-)

Expression


Co-expression Network